Return to main results Retrieve Phyre Job Id

Job DescriptionP08956
Confidence99.15%DateThu Jan 5 11:01:43 GMT 2012
Rank122Aligned Residues373
% Identity18%Templatec3dinB_
PDB info PDB header:membrane protein, protein transportChain: B: PDB Molecule:protein translocase subunit seca; PDBTitle: crystal structure of the protein-translocation complex formed by the2 secy channel and the seca atpase
Resolution4.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   442.......450.........460.........470.........480.........490.........500.........510.........520.
Predicted Secondary structure 



























Query SS confidence 















































































Query Sequence  ELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRING
Query Conservation     

 

  

  
        
  

 







 


 

  
      








  
  
    
       
Alig confidence 
















.......


























..


























Template Conservation 



 





 
 
  .......
 



 








 
 
 
 

 
..  




 




 



 
  

  
Template Sequence  GMRPFDVQVMGGIALHE. . . . . . . GKVAEMKTGEGKTLAATMPIYLNALIG. . KGVHLVTVNDYLARRDALWMGPVYLFL
Template Known Secondary structure 




STT.......SS

SSSS
TTS..S
S
TT
Template Predicted Secondary structure 





.......








..



Template SS confidence 















































































   73......80......... 90.........100.........110...... ...120.........130.........140...
 
   522.......530. ........540.........550
Predicted Secondary structure 




...................................................











Query SS confidence 









. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .


















Query Sequence  DTFNSIFDIK. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . GLTDKFPEDSTKIHVATVQ
Query Conservation       
    ...................................................            
 
 
 
Alig confidence 









...................................................


















Template Conservation 




 
   
                                                     


  
  





  
Template Sequence  GLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAYLCDVTYGTNN
Template Known Secondary structure  T




SS



S
TTTT



SS
SSS


S

GGG




SS
Template Predicted Secondary structure 























































Template SS confidence 















































































   144.....150.........160.........170.........180.........190.........200.........210.........220...
 
   551........560 .........570.........580........ .590.........600.........610 ....
Predicted Secondary structure  .....















........


...

Query SS confidence 









. . . . .



























. . . . . . . .





















. . .



Query Sequence  SLVKRTLQSD. . . . . EPMPVARYDCIVVDEAHRGYILDKEQTE. . . . . . . . GELQFRSQLDYVSAYRRILDHF. . . DAVK
Query Conservation   
        .....       










          ........               
 

  
...

  
Alig confidence 









.....



























........





















...



Template Conservation 









        
 
    





















        
         
    

 



   
Template Sequence  EFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFTVDEKART
Template Known Secondary structure  SSS
S
TT


SS



TTT

S







TTTS
S
S


SSS
Template Predicted Secondary structure 


































Template SS confidence 















































































   224.....230.........240.........250.........260.........270.........280.........290.........300...
 
   615.... 620.. .......630.........640...
Predicted Secondary structure 
..................................................


.









Query SS confidence 




. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .


.




















Query Sequence  IALTA. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . TPA. LHTVQIFGEPVYRYTYRTAVI
Query Conservation 




..................................................

 .  
   

  
  


  

 
Alig confidence 




..................................................


.




















Template Conservation 
 


 
    
       
       
   
  

 
  
   
 



 

 
 



 


   

 

 






Template Sequence  IILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSGGLHQAIE
Template Known Secondary structure 


SSS


S


TTTS
TTTS
B
TTT

B
B

TT
S
B
S

SSSS
Template Predicted Secondary structure 





























Template SS confidence 















































































   304.....310.........320.........330.........340.........350.........360.........370.........380...
 
   644.....650.........660... ......670.........680.........690.........700.. .......710.
Predicted Secondary structure 














..........









..

Query SS confidence 



















. . . . . . . . . .






































. .








Query Sequence  DGFLIDQDPPIQIITRNAQE. . . . . . . . . . GVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGL. . VIPAFNRAV
Query Conservation 

 
                .......... 
                                    
..        
Alig confidence 



















..........






































..








Template Conservation 


 
 
  
  
 



 

 

 
 

 





 

  
   

 
 

 


 

  
 
  
 
  
   
  

Template Sequence  AKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGMEVVVIPTHKPMIRKDHDDLVFRTQKEKYEKI
Template Known Secondary structure  SS










TTTTTGGGSS
S

STS








SSTT
S
SST
Template Predicted Secondary structure 































Template SS confidence 















































































   384.....390.........400.........410.........420.........430.........440.........450.........460...
 
   712.......720.........730.........740.........750.........760.........770.........780.........790.
Predicted Secondary structure 

























Query SS confidence 















































































Query Sequence  CNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVV
Query Conservation     
          





    

  
   
                  
             

  

      


Alig confidence 












..




















...........

























...



Template Conservation    

      


..




 

  

 

  
   ...........

 
 




    





 

  
... 


Template Sequence  VEEIEKRYKKGQP. . VLVGTTSIEKSELLSSMLKKK. . . . . . . . . . . GIPHQVLNAKYHEKEAEIVAKAGQKG. . . MVTI
Template Known Secondary structure  TT

..SST...........



SSS
SSSSS...
Template Predicted Secondary structure 



..


...........











...
Template SS confidence 















































































   464.....470...... ...480.........490....... ..500.........510.........520... ....
 
   792.......800... ......810.........820.........830.........840.
Predicted Secondary structure 







.........

















Query SS confidence 











. . . . . . . . .





































Query Sequence  TVDLLTTGVDIP. . . . . . . . . SICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKI
Query Conservation 




 





......... 
  

  
   
     
 


  
      
    
Alig confidence 











.........















.












.






Template Conservation 












   
   





 

  

 


. 

 








.


 
 
Template Sequence  ATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRID. NQLRGRAGRQGDP. GESIFFL
Template Known Secondary structure  GGGSSS





SSGGGSSS
SS

SS.TS

TT

.
Template Predicted Secondary structure 



















.



.

Template SS confidence 


























































   528.530.........540.........550.........560.... .....570....... ..580....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions