Job Description P08956 Confidence 99.95% Date Thu Jan 5 11:01:43 GMT 2012 Rank 40 Aligned Residues 263 % Identity 23% Template c2z83A_ PDB info PDB header:viral protein Chain: A: PDB Molecule:helicase/nucleoside triphosphatase; PDBTitle: crystal structure of catalytic domain of japanese2 encephalitis virus ns3 helicase/nucleoside triphosphatase3 at a resolution 1.8 Resolution 1.80 Å

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		462	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	G	Q	Q	E	I	L	L	A	M	A	T	G	T	G	K	T	R	T	A	I	A	M	M	F	R	L	I	Q	S	Q	R	F	K	R	I	L	F	L	V	D	R	R	S	L	G	E	Q	A	L	G	A	F	E	D	T	R	I	N	G	D	T	F	N	S	I	F	D	I	K	G	L	T	D	K	F	P	E	D	S
Query Conservation
Alig confidence																																		.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																		.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	K	R	Q	M	T	V	L	D	L	H	P	G	S	G	K	T	R	K	I	L	P	Q	I	I	K	D	A	I	Q	Q	R	.	L	R	T	A	V	L	A	P	T	R	V	V	A	A	E	M	A	E	A	L	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	P	V	R	Y	Q	T	G	N
Template Known Secondary structure		S	T	T									T	T	S		T	T	T	T												T	T	.									S											T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	S
Template Predicted Secondary structure																																		.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		185	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.		.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.																	.	.	240	.	.	.	.	.	.	.
		542	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	K	I	H	V	A	T	V	Q	S	L	V	K	R	T	L	Q	S	D	E	P	M	P	V	A	R	Y	D	C	I	V	V	D	E	A	H	R	G	Y	I	L	D	K	E	Q	T	E	G	E	L	Q	F	R	S	Q	L	D	Y	V	S	A	Y	R	R	I	L	D	H	F	D	A	V	K	I	A	L	T	A	T	P
Query Conservation
Alig confidence																					.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	I	V	D	V	M	C	H	A	T	L	T	H	R	L	M	S	P	N	.	.	.	.	V	P	N	Y	N	L	F	V	M	D	E	A	H	F	.	.	.	.	.	.	.	.	.	.	.	.	.	T	D	P	A	S	I	A	A	R	G	Y	I	A	T	K	V	E	L	G	E	A	A	A	I	F	M	T	A	T	P
Template Known Secondary structure			S															S			.	.	.	.					S					S	S	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.		S																T	T	S								S	S
Template Predicted Secondary structure																					.	.	.	.															.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		256	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.					.	.	.	.	.	280	.	.	.	.	.	.	.	.														.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
		622	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	L	H	T	V	Q	I	F	G	E	P	V	Y	R	Y	T	Y	R	T	A	V	I	D	G	F	L	I	D	Q	D	P	P	I	Q	I	I	T	R	N	A	Q	E	G	V	Y	L	S	K	G	E	Q	V	E	R	I	S	P	Q	G	E	V	I	N	D	T	L	E	D	D	Q	D	F	E	V	A	D	F	N	R	G
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	G	T	T	D	P	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	D	S	N	A	P	I	H	D	L	Q	D	E	I	P	D	R	A	W	S	S	G	Y	E	W	I	T	E	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		T	T				S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				S	S											S	S			S	S								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		320	.	.	.	.	.	.																				.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.
		702	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	V	I	P	A	F	N	R	A	V	C	N	E	L	T	N	Y	L	D	P	T	G	S	Q	K	T	L	V	F	C	V	T	N	A	H	A	D	M	V	V	E	E	L	R	A	A	F	K	K	K	Y	P	Q	L	E	H	D	A	I	I	K	I	T	G	D	A	D	K	D	A	R	K	V	Q	T	M	I	T	R	F
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	A	G	K	T	V	W	F	V	A	S	V	K	M	G	N	E	I	A	M	C	L	Q	R	A	.	.	.	.	.	.	.	.	.	.	.	G	K	K	V	I	Q	L	N	R	K	S	Y	D	T	E	Y	.	.	.	.	P	K	C
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.			S							S															T	.	.	.	.	.	.	.	.	.	.	.	T							S	T	T						G	.	.	.	.	G	G	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.
Template SS confidence
																							355	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.												380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.					.	.	.
		782	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.																		.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.
Predicted Secondary structure																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		N	K	E	R	L	P	N	I	V	V	T	V	D	L	L	T	T	G	V	D	I	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	S	I	C	N	I	V	F	L	R	K	V	R	S	R	I	L	Y	E	Q	M	K	G	R	A	T	R	L	C	P	E	V	N	K	T	S	F	K	I	F	D
Query Conservation																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence						.												.					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.
Template Conservation						.												.																																																				.	.
Template Sequence		K	N	G	D	.	W	D	F	V	I	T	T	D	I	S	A	.	N	F	G	A	S	R	V	I	D	C	R	K	S	V	K	P	T	I	L	E	E	G	E	G	R	V	I	L	G	N	P	S	P	I	T	S	A	S	A	A	Q	R	R	G	R	V	G	R	N	P	N	.	.	Q	V	G	D	E	Y	H	Y	G
Template Known Secondary structure		S	S			.		S					S	S				.			S		S																S	S	S							S														T	T	S	S			T	T	.	.
Template Predicted Secondary structure						.												.																																																				.	.
Template SS confidence
		399	400	.	.		.	.	.	.	.	.	.	410	.	.	.		.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.			.	.	.	.	.	470	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions