Job Description P08956 Confidence 99.94% Date Thu Jan 5 11:01:43 GMT 2012 Rank 45 Aligned Residues 309 % Identity 17% Template c2vsxA_ PDB info PDB header:translation/hydrolase Chain: A: PDB Molecule:atp-dependent rna helicase eif4a; PDBTitle: crystal structure of a translation initiation complex Resolution 2.8 Å

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		434	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.		.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.
Predicted Secondary structure																																																				.
Query SS confidence																																																				.
Query Sequence		F	A	D	N	P	G	M	S	E	L	G	L	R	Y	Y	Q	E	D	A	V	R	A	V	E	K	A	I	V	K	G	Q	Q	E	I	L	L	A	M	A	T	G	T	G	K	T	R	T	A	I	A	.	M	M	F	R	L	I	Q	S	Q	R	F	K	R	I	L	F	L	V	D	R	R	S	L	G	E	Q	A	L	G
Query Conservation																																																				.
Alig confidence																												.	.	.	.	.																				.
Template Conservation																												.	.	.	.	.
Template Sequence		L	R	G	V	F	G	Y	G	F	E	E	P	S	A	I	Q	Q	R	A	I	M	P	I	I	E	G	.	.	.	.	.	H	D	V	L	A	Q	A	Q	S	G	T	G	K	T	G	T	F	S	I	A	A	L	Q	R	I	D	T	S	V	K	A	P	Q	A	L	M	L	A	P	T	R	E	L	A	L	Q	I	Q	K
Template Known Secondary structure							T	T	T			S														T	T	.	.	.	.	.									T	T	S	S															T	T			S								S	S
Template Predicted Secondary structure																												.	.	.	.	.
Template SS confidence
		34	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.						60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.
		513	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	E	D	T	R	I	N	G	D	T	F	N	S	I	F	D	I	K	G	L	T	D	K	F	P	E	D	S	T	K	I	H	V	A	T	V	Q	S	L	V	K	R	T	L	Q	S	D	E	P	M	P	V	A	R	Y	D	C	I	V	V	D	E	A	H	R	G	Y	I	L	D	K	E	Q	T	E	G	E	L	Q
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.																										.	.
Template Conservation																	.	.	.	.	.	.	.	.																										.	.
Template Sequence		V	V	M	A	L	A	F	H	M	D	I	K	V	H	A	.	.	.	.	.	.	.	.	C	I	G	L	R	D	A	Q	I	V	V	G	T	P	G	R	V	F	D	N	I	Q	R	R	R	.	.	F	R	T	D	K	I	K	M	F	I	L	D	E	A	D	E	M	L	S	S	G	F	K	E	Q	I	Y	Q	I	F
Template Known Secondary structure							T	S	S	S							.	.	.	.	.	.	.	.					S	S		S															T	T		.	.	S			T	T								S							T	T
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.																										.	.
Template SS confidence
		109	110	.	.	.	.	.	.	.	.	.	120	.	.	.									.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.			.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		593	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	R	S	Q	L	D	Y	V	S	A	Y	R	R	I	L	D	H	F	D	A	V	K	I	A	L	T	A	T	P	A	L	H	T	V	Q	I	F	G	E	P	V	Y	R	Y	T	Y	R	T	A	V	I	D	G	F	L	I	D	Q	D	P	P	I	Q	I	I	T	R	N	A	Q	E	G	V	Y	L	S	K	G	E	Q
Query Conservation
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.	.																																																						.	.	.	.	.	.	.	.	.
Template Conservation							.	.	.	.	.	.	.	.	.	.	.	.	.																																																						.	.	.	.	.	.	.	.	.
Template Sequence		T	L	L	P	P	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	Q	V	V	L	L	S	A	T	M	P	N	D	V	L	E	V	T	T	K	F	M	R	N	P	V	R	I	L	V	K	K	D	E	L	T	L	E	G	I	K	Q	F	Y	V	N	V	E	E	E	E	Y	.	.	.	.	.	.	.	.	.
Template Known Secondary structure				S		T	.	.	.	.	.	.	.	.	.	.	.	.	.	T								S															S	S													S	T	T										S	G	G	G	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.	.																																																						.	.	.	.	.	.	.	.	.
Template SS confidence
		189	190	.	.	.														.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		673	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	R	I	S	P	Q	G	E	V	I	N	D	T	L	E	D	D	Q	D	F	E	V	A	D	F	N	R	G	L	V	I	P	A	F	N	R	A	V	C	N	E	L	T	N	Y	L	D	P	T	G	S	Q	K	T	L	V	F	C	V	T	N	A	H	A	D	M	V	V	E	E	L	R	A	A	F	K	K	K	Y
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	Y	E	C	L	T	D	L	Y	D	S	I	S	V	T	Q	A	V	I	F	C	N	T	R	R	K	V	E	E	L	T	T	K	L	R	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												S			S							S	S													.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.
Template SS confidence
																																								247	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
		753	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	Q	L	E	H	D	A	I	I	K	I	T	G	D	A	D	K	D	A	R	K	V	Q	T	M	I	T	R	F	N	K	E	R	L	P	N	I	V	V	T	V	D	L	L	T	T	G	V	D	I	P	S	I	C	N	I	V	F	L	R	K	V	R	S	R	I	L	Y	E	Q	M	K	G	R	A	T	R
Query Conservation
Alig confidence		.	.	.	.																														.
Template Conservation		.	.	.	.																														.
Template Sequence		.	.	.	.	N	D	K	F	T	V	S	A	I	Y	S	D	L	P	Q	Q	E	R	D	T	I	M	K	E	F	R	S	G	S	.	S	R	I	L	I	S	T	D	L	L	A	R	G	I	D	V	Q	Q	V	S	L	V	I	N	Y	D	L	P	A	N	K	E	N	Y	I	H	R	I	G	R	K	G	V
Template Known Secondary structure		.	.	.	.		T	T								T	T	S													T	T	T	S	.		S						S	G	G	G	S	S					S							S	S			S	S	G	G	G	G
Template Predicted Secondary structure		.	.	.	.																														.
Template SS confidence
						282	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310		.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.

No model constructed - rank, confidence too low

---

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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