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Job DescriptionP08956
Confidence99.96%DateThu Jan 5 11:01:43 GMT 2012
Rank35Aligned Residues271
% Identity22%Templatec2vbcA_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:dengue 4 ns3 full-length protein; PDBTitle: crystal structure of the ns3 protease-helicase from dengue2 virus
Resolution3.15 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   462.......470......... 480.........490.........500.........510.........520.........530.........540
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Query Sequence  KGQQEILLAMATGTGKTR. TAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPED
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Template Sequence  RKKRLTIMDLHPGAGKTKRILPSIVREALKRR. . LRTLILAPTRVVAAEMEEALRGLPIRYQTPAVKSDHTG. . . . . . . .
Template Known Secondary structure  STT



TTT

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   184.....190.........200.........210..... ....220.........230.........240.........250...
 
   541........550.........560.........570.........580.........590.........600.........610.........620
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Query Sequence  STKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTAT
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Template Sequence  REIVDLMCHATFTTRLL. . . SSTRVPNYNLIVMDEAHF. . . . . . . . . . . . . TDPCSVAARGYISTRVEMGEAAAIFMTAT
Template Known Secondary structure  SS
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   254.....260.........270 .........280........ .290.........300.........310.......
 
   621........630.........640.........650.........660.........670.........680.........690.........700
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Query Sequence  PALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNR
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Template Sequence  PPGSTDPF. . . . . . . . . . . . . . . . . . . PQSNSPIEDIEREIPERSWNTGFDWITDY. . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure 
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   318.320..... ....330.........340.........350....
 
   701........710.........720.........730.........740.........750.........760.........770.........780
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Query Sequence  GLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITR
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . QGKTVWFVPSIKAGNDIANCLR. . . . . . . . . . . KSGKRVIQLSRKT. . . . FDTEYPK
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   355....360.........370...... ...380......... 390......
 
   781........790.........800......... 810.........820.........830.........840
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Query Sequence  FNKERLPNIVVTVDLLTTGVDIPSICNIV. . . . . . . . . . . . . . . . . . . . FLRKVRSRILYEQMKGRATRLCPEVNKTSFK
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Template Sequence  TKLTD. WDFVVTTDISEMGANFR. AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNPA. . QEDDQY
Template Known Secondary structure  S
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GGGGTT



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   397..400. ........410........ .420.........430.........440.........450.........460...... ...470..
 
   841..
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Query Sequence  IFD
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Template Sequence  VFS
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   473..
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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