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Job DescriptionP08956
Confidence100.00%DateThu Jan 5 11:01:43 GMT 2012
Rank8Aligned Residues370
% Identity18%Templatec2va8A_
PDB info PDB header:hydrolaseChain: A: PDB Molecule:ski2-type helicase; PDBTitle: dna repair helicase hel308
Resolution2.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   410.........420.........430.........440.........450.........460.........470.........480.........
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Query Sequence  LPEWHRPEELLEMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLI
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Template Sequence  IEDLKLPSNVIEIIKK. . . . . . . . . . . . . . RGIKKLNPPQTEAVKKGLLE. . . . GNRLLLTSPTGSGKTLIAEMGIISFL
Template Known Secondary structure  GGGSSS
T..............TS

B

TTTTT....T



TTS
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   3......10........ .20.........30........ .40.........50.........60....
 
   490.........500.........510.........520.........530.........540.........550.........560.........
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Query Sequence  QSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVARYD
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Template Sequence  LKNG. GKAIYVTPLRALTNEKYLTFKDWELIGFKVAMTSGDYDTDDAWL. KNYDIIITTYEKLDSLWRHRPEWL. . NEVN
Template Known Secondary structure  S
.S
S
GGGGGGT



S
SSS

GGG.GG
S


GGG..GG
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   65... .70.........80.........90.........100.........110.. .......120.........130...... ...140
 
   570.........580.........590.........600.........610.........620.........630.........640.........
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Query Sequence  CIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLID
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Template Sequence  YFVLDELHYLNDPERGPVVESVTIRAK. . . . . . . . . . . . . . RRNLLALSATISNYKQ. . . . . . . . . . . IAKWLGAEPVAT
Template Known Secondary structure 
SGGGGG
TTT..............TSS

TT...........T

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   141........150.........160....... ..170.........180... ......190.....
 
   650.........660.........670.........680.........690.........700.........710.........720.........
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Query Sequence  QDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNRGLVIPAFNRAVCNELTNYLDPTGSQKTLV
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Template Sequence  NWRPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSL. . . . . . . . . . . . . . . . . . . . . . . . . SKNGQVLV
Template Known Secondary structure 


SS

SSTTTTS
SSS.........................TTT

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   196...200.........210.........220.........230.........240.. .......250
 
   730.........740.........750..... ....760.........770.........780....
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Query Sequence  FCVTNAHADMVVEELRAAFKKKYPQL. . . . . . . . . . . . . . . . . . . . . . . . . EHDAIIKITGDADKDARKVQTMITRFNKE
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Template Sequence  FRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQR
Template Known Secondary structure 
SSTTTSS


T

SS
TTT
TTS
TT
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   251........260.........270.........280.........290.........300.........310.........320.........330
 
   785....790.........800.........810.........820.........830.........840.........850.....
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Query Sequence  RLPNIVVTVDLLTTGVDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKIFDCVDIYSTLESVD
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Template Sequence  K. IKVIVATPTLAAGVNLPARTVIIGD. . . IPIMEYKQMSGRAGRPGFDQIGESIVVVRDKEDVDRVFKKY
Template Known Secondary structure 
.S

GGGGGSS


BS

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TTB

TTT
S

S
GGGT
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   331 ........340.........350...... ...360.........370.........380.........390.......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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