Job Description P08956 Confidence 99.63% Date Thu Jan 5 11:01:43 GMT 2012 Rank 78 Aligned Residues 196 % Identity 19% Template c2kbeA_ PDB info PDB header:hydrolase Chain: A: PDB Molecule:atp-dependent rna helicase dbp5; PDBTitle: solution structure of amino-terminal domain of dbp5p Resolution UNK

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		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	V	R	D	T	R	N	M	S	K	A	L	P	E	W	H	R	P	E	E	L	L	E	M	L	G	S	E	P	Q	K	Q	N	Q	W	F	A	D	N	P	G	M	S	E	L	G	L	R	Y	Y	Q	E	D	A	V	R	A	V	E	K	A	I	V	K	G	Q	Q	E	I	L	L	A	M	A	T	G	T	G	K	T
Query Conservation
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Template Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Template Sequence		D	P	N	S	P	L	Y	S	A	K	S	F	D	E	L	G	L	A	P	E	L	L	K	G	I	Y	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	K	F	Q	K	P	S	K	I	Q	E	R	A	L	P	L	L	.	.	.	L	H	N	P	P	R	N	M	I	A	Q	S	Q	S	G	T	G	K	T
Template Known Secondary structure		G	G	G								S					S	S											.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S	S				S									S	.	.	.	S			S	S							S	S	T	T
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.	.
Template SS confidence
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.															110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.				.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.
		479	480	.	.	.	.	.		.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.
Predicted Secondary structure									.
Query SS confidence									.
Query Sequence		R	T	A	I	A	M	M	.	F	R	L	I	Q	S	Q	R	F	K	R	I	L	F	L	V	D	R	R	S	L	G	E	Q	A	L	G	A	F	E	D	T	R	I	N	G	D	T	F	N	S	I	F	D	I	K	G	L	T	D	K	F	P	E	D	S	T	K	I	H	V	A	T	V	Q	S	L	V	K	R	T	L
Query Conservation									.
Alig confidence									.																																																							.
Template Conservation																																																																.
Template Sequence		A	A	F	S	L	T	M	L	T	R	V	N	P	E	D	A	S	P	Q	A	I	C	L	A	P	S	R	E	L	A	R	Q	T	L	E	V	V	Q	E	M	G	K	F	T	K	I	T	S	Q	L	I	V	P	D	S	F	E	K	N	K	Q	I	.	N	A	Q	V	I	V	G	T	P	G	T	V	L	D	L	M	R
Template Known Secondary structure															T	T										S	S															S	T	T		S							S	T	T		S			S	S			.			S						T	T	T
Template Predicted Secondary structure																																																																.
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.		.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		558	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610			.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																							.	.
Query SS confidence																																																							.	.
Query Sequence		Q	S	D	E	P	M	P	V	A	R	Y	D	C	I	V	V	D	E	A	H	R	G	Y	I	L	D	K	E	Q	T	E	G	E	L	Q	F	R	S	Q	L	D	Y	V	S	A	Y	R	R	I	L	D	H	F	.	.	D	A	V	K	I	A	L	T	A	T	P	A	L	H	T	V	Q	I
Query Conservation																																																							.	.
Alig confidence					.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.
Template Conservation					.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	K	L	.	.	M	Q	L	Q	K	I	K	I	F	V	L	D	E	A	D	N	M	L	D	Q	Q	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	G	D	Q	C	I	R	V	K	R	F	L	P	K	D	T	Q	L	V	L	F	S	A	T	F	A	D	A	V	R	Q	Y
Template Known Secondary structure		T	T	S	.	.			T	T	S															S	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.												T	T	T	T	S							S
Template Predicted Secondary structure					.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		225	.	.			.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.															250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions