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Job DescriptionP08956
Confidence97.66%DateThu Jan 5 11:01:43 GMT 2012
Rank163Aligned Residues166
% Identity16%Templatec2j289_
PDB info PDB header:ribosomeChain: 9: PDB Molecule:signal recognition particle 54; PDBTitle: model of e. coli srp bound to 70s rncs
Resolution8.0 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   421........430.........440.........450.........460...... ...470.........480.........
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Query Sequence  EMLGSEPQKQNQWFADNPGMSELGLRYYQEDAVRAVEKAIVKGQQE. . . . . . . . . . . ILLAMATGTGKTRTAIAMMFRLI
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Template Sequence  PVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLR
Template Known Secondary structure  TT



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   46...50.........60.........70.........80.........90.........100.........110.........120.....
 
   490.........500.. .......510.........520.........530.........540.........550.........560.......
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Query Sequence  QSQRFKRILFLVD. . RRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDSTKIHVATVQSLVKRTLQSDEPMPVAR
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Template Sequence  EKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVD. . . . . . . . . . . . . . . . . . . . . . IVNAALKEAKLKF
Template Known Secondary structure  TSSS



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   126...130.........140.........150.........160.........170 .........180...
 
   568.570.........580.........590.........600.........610.........620
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Query Sequence  YDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHFDAVKIALTAT
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Template Sequence  YDVLLVDTAGRLHVDEAMMDEIKQVHASINP. . . . . . . . . . . . VETLFVVDAM
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   184.....190.........200.........210.... .....220....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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