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Job DescriptionP08956
Confidence99.86%DateThu Jan 5 11:01:43 GMT 2012
Rank57Aligned Residues262
% Identity18%Templatec2f55C_
PDB info PDB header:hydrolase/dnaChain: C: PDB Molecule:polyprotein; PDBTitle: two hepatitis c virus ns3 helicase domains complexed with2 the same strand of dna
Resolution3.30 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   462.......470.........480.........490.........500.........510.........520.........530.........540.
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Query Sequence  KGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFEDTRINGDTFNSIFDIKGLTDKFPEDS
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Template Sequence  QTFQVAHLHAPTGSGKSTKVPAAYA. . . . . AQGYKVLVLNPSVAATLGFGAYMSKAHGIDPNIRTGV. . . . . . . RTITTG
Template Known Secondary structure  SS
B




SSSSTTTTS.....TTS

S
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   195....200.........210......... 220.........230.........240.........250...... ...260..
 
   542.......550.........560.........570.........580.........590.........600.........610 .........620
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Query Sequence  TKIHVATVQSLVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQLDYVSAYRRILDHF. DAVKIALTAT
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Template Sequence  GSITYSTYGKFLAD. . . . . GGCSGGAYDIIICDECHS. . . . . . . . . . . . . TDSTTILGIGTVLDQAETAGARLVVLATAT
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S

T.....TSSSTT

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   263......270...... ...280.........290.... .....300.........310.........320....
 
   621........630.........640.........650.........660.........670.........680.........690.........700
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Query Sequence  PALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERISPQGEVINDTLEDDQDFEVADFNR
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Template Sequence  P. . . . . . . . . . . . . . . . . . . . . . PGSVTVPHPNIEEIGLSNNGEIPFYGKAIPIEAIK. . . . . . . . . . . . . . . . . . . . . .
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TT
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   325 ....330.........340.........350.........360
 
   701........710.........720.........730.........740.........750.........760.........770.........780
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Query Sequence  GLVIPAFNRAVCNELTNYLDPTGSQKTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITR
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Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . GGRHLIFCHSKKKCDELAAKLTGL. . . . . . . . . . . GLNAVAYYRGLD. . . . . . . VSV
Template Known Secondary structure  .......................TSB
SST...........T




B
SSS
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   361........370.........380.... .....390...... ...
 
   781........790......... 800.........810.........820.........830.........840.
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Query Sequence  FNKERLPNIVVTVDLLTTG. . . . . . . . . . . . . . . . . VDIPSICNIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKI
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Template Sequence  IPPIGD. VVVVATDALFTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGRGRS. . GIYRFVT
Template Known Secondary structure  S
SSSS.B


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   400..... ....410.........420.........430.........440.........450.........460....... ..470....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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