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Job DescriptionP08956
Confidence99.85%DateThu Jan 5 11:01:43 GMT 2012
Rank59Aligned Residues338
% Identity20%Templatec1tf2A_
PDB info PDB header:protein transportChain: A: PDB Molecule:preprotein translocase seca subunit; PDBTitle: crystal structure of seca:adp in an open conformation from2 bacillus subtilis
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   443......450.........460.........470.........480.........490.........500.........510...... ...520.
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Query Sequence  LGLRYYQEDAVRAVEKAIVKGQQEILLAMATGTGKTRTAIAMMFRLIQSQRFKRILFLVDRRSLGEQALGAFED. TRING
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Template Sequence  TGMFPFKVQLMGGV. . ALHDGN. . . IAEMKTGEGKTLTSTLPVYLNALTG. . KGVHVVTVNEYLASRDAEQMGKIFEFLG
Template Known Secondary structure  S



..TTS...

TTS
TTS..S
SSTT
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   77..80.........90 ...... ...100.........110.........120. ........130.........140.........
 
   522.......530.........540.........550. ........560.........570.........580.........590......
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Query Sequence  DTFNSIFDIKGLTDKFPEDSTKIHVATVQS. . . . . LVKRTLQSDEPMPVARYDCIVVDEAHRGYILDKEQTEGELQFRSQ
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Template Sequence  LTVGLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSI. . . . . . . . . . . . . . . . .
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TT

TTSSTT
SSGGG






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   150.........160.........170.........180.........190.........200.........210..
 
   597..600.........610.........620.........630.........640.........650.........660.........670......
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Query Sequence  LDYVSAYRRILDHFDAVKIALTATPALHTVQIFGEPVYRYTYRTAVIDGFLIDQDPPIQIITRNAQEGVYLSKGEQVERI
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Template Sequence  . . . . . . . . . LIDEARTPLIISGQAAKSTKL. . . . . . . . . . . YVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKA
Template Known Secondary structure  .........TTSTT

SS



...........TT

SSSS
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   213......220.........230... ......240.........250.........260.........270..
 
   677..680.........690.........700...
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Query Sequence  SPQGEVINDTLEDDQDFEVADFNRGLV. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  FGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTL
Template Known Secondary structure  TT
S
SSSGGGT

BTTTTTB
TTT

B
TT


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   273......280.........290.........300.........310.........320.........330.........340.........350..
 
   704.....710.........720.....
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . IPAFNRAVCNELTNYLDPTGSQ
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Template Sequence  ATITFQNYFRMYEKLAGMTGTAKTEEEEFRNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTG. . Q
Template Known Secondary structure  TTSSS

GGG





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SST..
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   353......360.........370.........380.........390.........400.........410.........420......... 430
 
   726...730.........740.........750.........760.........770.........780.........790.........800..
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Query Sequence  KTLVFCVTNAHADMVVEELRAAFKKKYPQLEHDAIIKITGDADKDARKVQTMITRFNKERLPNIVVTVDLLTTGVDI. . .
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Template Sequence  PVLVGTVAVETSELISKLLK. . . . . . . . . . . NKGIPHQVLNAKNHEREAQIIEEAGQKG. . . AVTIATNMAGRGTDIKLG
Template Known Secondary structure 
SS...........TTT



SSSTSSSTT...
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   431........440.........450 .........460.........470........ .480.........490......
 
   803... ...810.........820.........830.........840.
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Query Sequence  PSIC. . . . . NIVFLRKVRSRILYEQMKGRATRLCPEVNKTSFKI
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Template Sequence  EGVKELGGLAVVGTERHESRRIDNQLRGRSGRQGDP. GITQFYL
Template Known Secondary structure  TT
GGGTSSS

SSTTSS
SS

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   497..500.........510.........520.........530.. .......
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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