Job Description P08956 Confidence 80.66% Date Thu Jan 5 11:01:43 GMT 2012 Rank 421 Aligned Residues 115 % Identity 17% Template c1nsfA_ PDB info PDB header:protein transport Chain: A: PDB Molecule:n-ethylmaleimide sensitive factor; PDBTitle: d2 hexamerization domain of n-ethylmaleimide sensitive factor (nsf) Resolution 1.90 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.					.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.								.	.	.	.	.	.	510	.	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.																																						.	.	.	.	.	.	.
Query SS confidence																			.	.	.	.																																						.	.	.	.	.	.	.
Query Sequence		E	D	A	V	R	A	V	E	K	A	I	V	K	G	Q	Q	E	.	.	.	.	I	L	L	A	M	A	T	G	T	G	K	T	R	T	A	I	A	M	M	F	R	L	I	Q	S	Q	R	F	K	R	I	L	F	L	V	D	R	.	.	.	.	.	.	.	R	S	L	G	E	Q	A	L	G	A	F	E	D	T	R
Query Conservation																			.	.	.	.																																						.	.	.	.	.	.	.
Alig confidence																			.	.	.	.																							.	.	.	.												.	.	.	.	.	.	.
Template Conservation																																													.	.	.	.
Template Sequence		L	D	D	G	E	L	L	V	Q	Q	T	K	N	S	D	R	T	P	L	V	S	V	L	L	E	G	P	P	H	S	G	K	T	A	L	A	A	K	I	A	E	E	S	.	.	.	.	N	F	P	F	I	K	I	C	S	P	D	K	M	I	G	F	S	E	T	A	K	C	Q	A	M	K	K	I	F	D	D	A	Y
Template Known Secondary structure																S	S		S									S	T	T	S	S													.	.	.	.			S							G	G	G	S	T	T
Template Predicted Secondary structure																																													.	.	.	.
Template SS confidence
		518	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560					.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.
		519	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	N	G	D	T	F	N	S	I	F	D	I	K	G	L	T	D	K	F	P	E	D	S	T	K	I	H	V	A	T	V	Q	S	L	V	K	R	T	L	Q	S	D	E	P	M	P	V	A	R	Y	D	C	I	V	V
Query Conservation
Alig confidence																												.	.	.	.	.
Template Conservation																												.	.	.	.	.
Template Sequence		K	S	Q	L	S	C	V	V	V	D	D	I	E	R	L	L	D	Y	V	P	I	G	P	R	F	S	.	.	.	.	.	N	L	V	L	Q	A	L	L	V	L	L	K	K	A	P	P	Q	G	R	K	L	L	I	I
Template Known Secondary structure		T	S	S													T	T		B	T	T	T	T	B			.	.	.	.	.											T	T				S	T	T
Template Predicted Secondary structure																												.	.	.	.	.
Template SS confidence
		594	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.						620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions