Job Description P08956 Confidence 100.00% Date Thu Jan 5 11:01:43 GMT 2012 Rank 13 Aligned Residues 302 % Identity 17% Template c1gm5A_ PDB info PDB header:helicase Chain: A: PDB Molecule:recg; PDBTitle: structure of recg bound to three-way dna junction Resolution 3.24 Å

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		443	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.		.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.
Predicted Secondary structure																									.
Query SS confidence																									.
Query Sequence		L	G	L	R	Y	Y	Q	E	D	A	V	R	A	V	E	K	A	I	V	K	G	Q	Q	.	E	I	L	L	A	M	A	T	G	T	G	K	T	R	T	A	I	A	M	M	F	R	L	I	Q	S	Q	R	F	K	R	I	L	F	L	V	D	R	R	S	L	G	E	Q	A	L	G	A	F	E	D	T	R	I	N	G
Query Conservation																									.
Alig confidence																									.																												.	.
Template Conservation																																																					.	.
Template Sequence		F	K	L	T	N	A	Q	K	R	A	H	Q	E	I	R	N	D	M	I	S	E	K	P	M	N	R	L	L	Q	G	D	V	G	S	G	K	T	V	V	A	Q	L	A	I	L	D	N	Y	E	A	G	.	.	F	Q	T	A	F	M	V	P	T	S	I	L	A	I	Q	H	Y	R	R	T	V	E	S	F	S	K	F
Template Known Secondary structure		S																			S	S	S										S	S	S	S																T	.	.	S							S																	T		S
Template Predicted Secondary structure																																																					.	.
Template SS confidence
		367	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.			.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.
		522	.	.	.	.	.	.	.	530								.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.
Predicted Secondary structure											.	.	.	.	.	.	.
Query SS confidence											.	.	.	.	.	.	.
Query Sequence		D	T	F	N	S	I	F	D	I	.	.	.	.	.	.	.	K	G	L	T	D	K	F	P	E	D	S	T	K	I	H	V	A	T	V	Q	S	L	V	K	R	T	L	Q	S	D	E	P	M	P	V	A	R	Y	D	C	I	V	V	D	E	A	H	R	G	Y	I	L	D	K	E	Q	T	E	G	E	L	Q	F	R
Query Conservation											.	.	.	.	.	.	.
Alig confidence											.	.	.	.	.	.	.																									.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.
Template Conservation																																										.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.
Template Sequence		N	I	H	V	A	L	L	I	G	A	T	T	P	S	E	K	E	K	I	K	S	G	L	R	N	G	Q	I	D	V	V	I	G	T	H	A	L	I	Q	E	.	.	.	.	.	.	.	D	V	H	F	K	N	L	G	L	V	I	I	D	E	Q	H	R	F	E	A	L	M	N	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S								S	S	S														S	S									T	T					.	.	.	.	.	.	.					S									S									S	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																										.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.
Template SS confidence
		445	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.								.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.
		595	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	Q	L	D	Y	V	S	A	Y	R	R	I	L	D	H	F	D	A	V	K	I	A	L	T	A	T	P	A	L	H	T	V	Q	I	F	G	E	P	V	Y	R	Y	T	Y	R	T	A	V	I	D	G	F	L	I	D	Q	D	P	P	I	Q	I	I	T	R	N	A	Q	E	G	V	Y	L	S	K	G	E	Q	V	E
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	K	G	K	M	V	D	T	L	V	M	S	A	T	P	I	P	R	S	M	A	L	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	Y	G	D	L	D	V	T	V	I	D	E	M	P	P	G	R	K	E	V	Q	T	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S									S	S										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.		T			S	S									S	S							.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.	.	.
Template SS confidence
															513	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.																	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.
		675	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	I	S	P	Q	G	E	V	I	N	D	T	L	E	D	D	Q	D	F	E	V	A	D	F	N	R	G	L	V	I	P	A	F	N	R	A	V	C	N	E	L	T	N	Y	L	D	P	T	G	S	Q	K	T	L	V	F	C	V	T	N	A	H	A	D	M	V	V	E	E	L	R	A	A	F	K	K	K	Y	P	Q
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.																						.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.																						.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	M	L	V	P	M	D	R	V	N	E	V	Y	E	F	V	R	Q	E	V	M	R	G	.	.	G	Q	A	F	I	V	Y	P	L	I	K	S	A	V	E	M	Y	E	Y	L	S	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					S	S	T												T	T	T	S	.	.			B			B													S	G	G	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.																						.	.	.	.	.	.	.	.	.
Template SS confidence
																												557	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.			.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.
		755	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.		.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.
Predicted Secondary structure																																																															.
Query SS confidence																																																															.
Query Sequence		L	E	H	D	A	I	I	K	I	T	G	D	A	D	K	D	A	R	K	V	Q	T	M	I	T	R	F	N	K	E	R	L	P	N	I	V	V	T	V	D	L	L	T	T	G	V	D	I	P	S	I	C	N	I	V	F	L	R	K	V	R	.	S	R	I	L	Y	E	Q	M	K	G	R	A	T	R	L	C	P	E
Query Conservation																																																															.
Alig confidence		.	.																														.																														.															.	.	.
Template Conservation		.	.																														.																																													.	.	.
Template Sequence		.	.	K	E	V	F	K	L	G	L	M	H	G	R	L	S	Q	E	E	K	D	R	V	M	L	E	F	A	E	G	R	.	Y	D	I	L	V	S	T	T	V	I	E	V	G	I	D	V	P	R	A	N	V	M	V	I	E	N	P	E	R	F	G	L	A	Q	L	H	Q	L	R	G	R	V	G	R	.	.	.	G
Template Known Secondary structure		.	.	G	S				B					S	S	S			S		S								T	T	T	S	.	S	S	B				S	S				S		S			T	T						B		S		S	S	S		T	T								T	S			.	.	.	S
Template Predicted Secondary structure		.	.																														.																																													.	.	.
Template SS confidence
				608	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.		.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680				.
		834	.	.	.	.	.	840	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	N	K	T	S	F	K	I	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	Q	E	A	Y	C	F	L	V
Template Known Secondary structure		S	T	T
Template Predicted Secondary structure
Template SS confidence
		685	.	.	.	.	690	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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