Job Description P08956 Confidence 99.77% Date Thu Jan 5 11:01:43 GMT 2012 Rank 64 Aligned Residues 259 % Identity 19% Template c1cu1B_ PDB info PDB header:hydrolase Chain: B: PDB Molecule:protein (protease/helicase ns3); PDBTitle: crystal structure of an enzyme complex from hepatitis c2 virus Resolution 2.50 Å

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		462	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	G	Q	Q	E	I	L	L	A	M	A	T	G	T	G	K	T	R	T	A	I	A	M	M	F	R	L	I	Q	S	Q	R	F	K	R	I	L	F	L	V	D	R	R	S	L	G	E	Q	A	L	G	A	F	E	D	T	R	I	N	G	D	T	F	N	S	I	F	D	I	K	G	L	T	D	K	F	P	E	D	S
Query Conservation
Alig confidence																			.	.	.												.	.																																							.	.	.	.	.	.	.
Template Conservation																			.	.	.												.	.																																							.	.	.	.	.	.	.
Template Sequence		Q	S	F	Q	V	A	H	L	H	A	P	T	G	S	G	K	S	.	.	.	T	K	V	P	A	A	Y	A	A	Q	G	.	.	Y	K	V	L	V	L	N	P	S	V	A	A	T	L	G	F	G	A	Y	M	S	K	A	H	G	I	D	P	N	I	R	T	G	V	R	T	I	T	.	.	.	.	.	.	.	T	G
Template Known Secondary structure		S	S										T	T	S		T	T	.	.	.	T									T	T	.	.								S																									S	S					.	.	.	.	.	.	.
Template Predicted Secondary structure																			.	.	.												.	.																																							.	.	.	.	.	.	.
Template SS confidence
		1195	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.				.	.	.	.	.	.	.	.	1220	.	.			.	.	.	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260								.	.
		542	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610		.	.	.	.	.	.	.	.	.	620
Predicted Secondary structure																																																																							.
Query SS confidence																																																																							.
Query Sequence		T	K	I	H	V	A	T	V	Q	S	L	V	K	R	T	L	Q	S	D	E	P	M	P	V	A	R	Y	D	C	I	V	V	D	E	A	H	R	G	Y	I	L	D	K	E	Q	T	E	G	E	L	Q	F	R	S	Q	L	D	Y	V	S	A	Y	R	R	I	L	D	H	F	.	D	A	V	K	I	A	L	T	A	T
Query Conservation																																																																							.
Alig confidence																.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.																				.
Template Conservation																.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	P	V	T	Y	S	T	Y	G	K	F	L	A	D	.	.	.	.	.	G	G	C	S	G	G	A	Y	D	I	I	I	C	D	E	C	H	S	.	.	.	.	.	.	.	.	.	.	.	.	.	T	D	S	T	T	I	L	G	I	G	T	V	L	D	Q	A	E	T	A	G	A	R	L	V	V	L	A	T	A	T
Template Known Secondary structure			S												T	.	.	.	.	.	T	S			T	T	S		S					T	T	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.		S														T	T	T	T	T		S							S	S
Template Predicted Secondary structure																.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1263	.	.	.	.	.	.	1270	.	.	.	.	.	.						.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.														.	.	.	.	.	1300	.	.	.	.	.	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.
		621	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700
Predicted Secondary structure
Query SS confidence
Query Sequence		P	A	L	H	T	V	Q	I	F	G	E	P	V	Y	R	Y	T	Y	R	T	A	V	I	D	G	F	L	I	D	Q	D	P	P	I	Q	I	I	T	R	N	A	Q	E	G	V	Y	L	S	K	G	E	Q	V	E	R	I	S	P	Q	G	E	V	I	N	D	T	L	E	D	D	Q	D	F	E	V	A	D	F	N	R
Query Conservation
Alig confidence			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	G	S	V	T	V	P	H	P	N	I	E	E	V	A	L	S	N	T	G	E	I	P	F	Y	G	K	A	I	P	I	E	A	I	R	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T							T	T								S		S	S				T	T					G	G	G	T	S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1325																							.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.
		701	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780
Predicted Secondary structure
Query SS confidence
Query Sequence		G	L	V	I	P	A	F	N	R	A	V	C	N	E	L	T	N	Y	L	D	P	T	G	S	Q	K	T	L	V	F	C	V	T	N	A	H	A	D	M	V	V	E	E	L	R	A	A	F	K	K	K	Y	P	Q	L	E	H	D	A	I	I	K	I	T	G	D	A	D	K	D	A	R	K	V	Q	T	M	I	T	R
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	H	L	I	F	C	H	S	K	K	K	C	D	E	L	A	A	K	L	S	G	L	.	.	.	.	.	.	.	.	.	.	.	G	I	N	A	V	A	Y	Y	R	G	L	D	V	S	V	I	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S							S	S														T	.	.	.	.	.	.	.	.	.	.	.	T								T	T	S		G	G	G	S	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.
Template SS confidence
																										1362	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.												.	.	.	.	.	1390	.	.	.	.	.	.	.	.	.	1400
		781	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.																						.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		F	N	K	E	R	L	P	N	I	V	V	T	V	D	L	L	T	T	G	V	D	I	P	S	I	C	N	I	V	F	L	R	K	V	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	R	I	L	Y	E	Q	M	K	G	R	A	T	R	L	C	P	E	V	N	K	T	S	F
Query Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.																				.														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.
Template Conservation		.	.																				.																																																				.	.
Template Sequence		.	.	P	T	I	G	D	V	V	V	V	A	T	D	A	L	M	T	G	Y	T	.	G	D	F	D	S	V	I	D	C	N	T	C	V	T	Q	T	V	D	F	S	L	D	P	T	F	T	I	E	T	T	T	V	P	Q	D	A	V	S	R	S	Q	R	R	G	R	T	G	R	G	R	R	.	.	G	I	Y	R	F
Template Known Secondary structure		.	.		S	S	S	S							T	T							.				S																		S	S	S											B									T	T	S		S	S	S		.	.
Template Predicted Secondary structure		.	.																				.																																																				.	.
Template SS confidence
				1401	.	.	.	.	.	.	.	.	1410	.	.	.	.	.	.	.	.	.		1420	.	.	.	.	.	.	.	.	.	1430	.	.	.	.	.	.	.	.	.	1440	.	.	.	.	.	.	.	.	.	1450	.	.	.	.	.	.	.	.	.	1460	.	.	.	.	.	.	.	.	.	1470			.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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