Job Description P75811 Confidence 99.82% Date Thu Jan 5 12:14:28 GMT 2012 Rank 66 Aligned Residues 170 % Identity 19% Template c3rh2A_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:hypothetical tetr-like transcriptional regulator; PDBTitle: crystal structure of a hypothetical tetr-like transcriptional2 regulator (sama_0099) from shewanella amazonensis sb2b at 2.42 a3 resolution Resolution 2.42 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		8	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	R	R	E	K	I	I	Q	A	T	L	E	A	V	K	L	Y	G	I	H	A	V	T	H	R	K	I	A	T	L	A	G	V	P	L	G	S	M	T	Y	Y	F	S	G	I	D	E	L	L	L	E	A	F	S	S	F	T	E	I	M	S	R	Q	Y	Q	A	F	F	S	D	V	S	D	A	P	G	A	C	Q	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	T	R	D	K	I	I	Q	A	S	L	E	L	F	N	E	H	G	E	R	T	I	T	T	N	H	I	A	A	H	L	D	I	S	P	G	N	L	Y	Y	H	F	R	N	K	E	D	I	I	R	C	I	F	D	Q	Y	E	Q	H	L	L	L	G	F	K	P	Y	A	D	Q	K	V	D	L	E	L	L	X	S	Y
Template Known Secondary structure																				G	G	G											T											S	S																				T				S	S				S
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		88	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.												.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure																																																								.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																								.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	T	D	M	I	Y	S	S	Q	V	A	T	P	D	N	M	E	L	M	Y	Q	L	Y	A	L	A	S	R	K	P	L	L	K	T	V	M	Q	N	W	M	Q	R	S	Q	Q	T	L	E	Q	W	F	E	P	G	.	.	.	.	.	.	.	.	.	.	.	T	A	R	A	L	D	A	F	I	E	G	M	T	L	H
Query Conservation																																																								.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																								.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	D	A	X	F	Y	T	X	W	Q	F	R	F	X	Y	A	N	L	A	D	I	L	A	R	D	D	T	L	K	A	R	Y	L	K	V	Q	Q	A	V	L	E	Q	S	I	A	V	L	N	Q	L	K	K	D	G	I	L	Q	I	E	D	E	R	I	A	D	L	A	D	T	I	K	X	I	I	G	F	W	I	S	Y
Template Known Secondary structure												T						S							T																													T	T	S	B				G	G	G
Template Predicted Secondary structure
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.
		157	.	.	160	.	.			.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure								.	.
Query SS confidence								.	.
Query Sequence		F	V	T	D	R	K	.	.	P	L	S	R	E	E	I	L	R	M	V	E	R	V	A
Query Conservation								.	.
Alig confidence								.	.
Template Conservation
Template Sequence		K	L	T	Q	S	S	I	A	T	I	S	K	A	S	L	Y	E	G	L	L	R	V	L
Template Known Secondary structure						S	S
Template Predicted Secondary structure
Template SS confidence
		162	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions