Job Description P75811 Confidence 99.87% Date Thu Jan 5 12:14:28 GMT 2012 Rank 25 Aligned Residues 170 % Identity 16% Template c2zb9A_ PDB info PDB header:transcription Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of tetr family transcription regulator2 sco0332 Resolution 2.25 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	A	N	D	P	Q	R	R	E	K	I	I	Q	A	T	L	E	A	V	K	L	Y	G	I	H	A	V	T	H	R	K	I	A	T	L	A	G	V	P	L	G	S	M	T	Y	Y	F	S	G	I	D	E	L	L	L	E	A	F	S	S	F	T	E	I	M	S	R	Q	Y	Q	A	F	F	S	D	V	S	D	A	P
Query Conservation
Alig confidence																																																																					.	.	.	.	.
Template Conservation																																																																					.	.	.	.	.
Template Sequence		R	R	P	A	E	E	V	R	A	E	V	L	H	A	V	G	E	L	L	L	T	E	G	T	A	Q	L	T	F	E	R	V	A	R	V	S	G	V	S	K	T	T	L	Y	K	W	W	P	S	K	G	A	L	A	L	D	G	Y	F	H	A	V	E	D	T	L	A	.	.	.	.	.	F	P	D	T	G	D	V	R
Template Known Secondary structure			S																						G	G	G																						S	S																			.	.	.	.	.				S	S
Template Predicted Secondary structure																																																																					.	.	.	.	.
Template SS confidence
		18	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.						.	.	.	.	.	90	.	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.											.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																														.	.	.	.	.	.	.	.	.	.
Query Sequence		G	A	C	Q	A	I	T	D	M	I	Y	S	S	Q	V	A	T	P	D	N	M	E	L	M	Y	Q	L	Y	A	L	A	S	R	K	P	L	L	K	T	V	M	Q	N	W	M	Q	R	S	Q	Q	T	L	E	Q	W	F	E	P	G	T	.	.	.	.	.	.	.	.	.	.	A	R	A	L	D	A	F	I	E	G
Query Conservation																																																														.	.	.	.	.	.	.	.	.	.
Alig confidence																																																														.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	D	L	L	A	Q	L	R	A	F	T	H	V	M	T	R	T	P	G	G	R	I	L	T	E	L	I	G	A	A	Q	T	D	A	D	L	A	T	A	Y	R	Q	L	Y	S	A	Q	R	R	A	L	A	A	E	R	L	R	H	A	R	E	L	G	Q	I	R	P	D	V	D	V	Q	V	L	V	D	Q	L	W	G
Template Known Secondary structure																		S														T	T												T																		T	T	S	S		T	T
Template Predicted Secondary structure
Template SS confidence
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
		153	.	.	.		.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.
Predicted Secondary structure						.
Query SS confidence						.
Query Sequence		M	T	L	H	.	F	V	T	D	R	K	P	L	S	R	E	E	I	L	R	M	V	E	R	V	A
Query Conservation						.
Alig confidence						.
Template Conservation
Template Sequence		A	V	Y	H	R	L	L	I	P	D	E	P	V	D	D	A	F	V	T	A	L	V	T	N	L	L
Template Known Secondary structure									S		S	S
Template Predicted Secondary structure
Template SS confidence
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions