 |
Job Description | P0A9B6 | Confidence | 94.69% | Date | Thu Jan 5 11:09:49 GMT 2012 |
Rank | 239 | Aligned Residues | 101 |
% Identity | 19% | Template | d1lssa_ |
SCOP info | NAD(P)-binding Rossmann-fold domains
| NAD(P)-binding Rossmann-fold domains
| Potassium channel NAD-binding domain
|
Resolution | 2.30 |
|
 |
  |   |
3 | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|  |  |  |
|
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
V | R | V | A | I | N | G | F | G | R | I | G | R | N | V | V | R | A | L | Y | E | S | G | R | R | A | E | I | T | V | V | A | I | N | E | L | A | D | A | A | G | M | A | H | L | L | K | Y | D | T | S | H | G | R | F | A | W | E | V | R | Q | E | R | D | Q | L | F | V | G | D | D | A | I | R | V | L | H | E | R | S |
Query Conservation |   |
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
|
|   |
|   |   |   |   |   |   |   |   |   |
|
|
|
|
|
|
|   |   |   |   |   |   |   |
|
|
|   |   |   |
|
|   |   |
|   |   |   |   |   |
|   |   |   |   |   |   |
|   |
|   |
|   |   |
|   |
|   |   |   |   |
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . |
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   |
|
|
|
|
|   |
|   |   |
|   |   |
|   |   |   |
|   |   |   |
| . | . | . | . |   |   |
|
|
|
|   |   | . | . |
|   |   |   |   |   |   |   |   |   |   |   | . | . | . | . | . | . | . | . | . | . | . | . |   |   |   |   |   |   |
|
|   |   |   |   |   |   |
|   |   |
|   |
Template Sequence |   |
M | Y | I | I | I | A | G | I | G | R | V | G | Y | T | L | A | K | S | L | S | E | K | G | . |
. |
. |
. |
H | D | I | V | L | I | D | I | . |
. |
D | K | D | I | C | K | K | A | S | A | E | I | . |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
. |
D | A | L | V | I | N | G | D | C | T | K | I | K | T | L | E | D | A | G |
Template Known Secondary structure |   |
|  |  |  |  |  |
|
| S |  |  |  |  |  |  |  |  |  |  |  |  | T | T | . | . | . | . |
|  |  |  |  |  |  | S | . | . |
|  |  |  |  |  |  |  |  |  |  |
| . | . | . | . | . | . | . | . | . | . | . | . | S | S |  |  |  |  | S |
| T | T | S |  |  |  |  |  |  | T | T |
Template Predicted Secondary structure |   |
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
| . | . | . | . |
|
|  |  |  |  |  |
| . | . |
|  |  |  |  |  |  |  |  |  |  |
| . | . | . | . | . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | |
|
|
|
. | . | . | . | . | . | 30 | . | |
|
. | . | . | . | . | . | . | . | 40 | . | . | . | |
|
|
|
|
|
|
|
|
|
|
|
. | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . |
  |
  |   |
83 | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | |
. | . | . | . | 120 | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |
| . |
|
|
|  |  |  |  |  |
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
L | Q | S | L | P | W | R | E | L | G | V | D | V | V | L | D | C | T | G | V | Y | G | S | R | E | H | G | E | A | H | I | A | A | . |
G | A | K | K | V | L | F | S | H | P | G | S | N |
Query Conservation |   |
|   |   |
|   |
|   |   |   |
|
|
|
|
|
|
|   |
|
|   |   |   |
|   |   |   |
|   |   |
|
|   |   | . |
|
|
|
|
|
|
|
|
|
|   |   |   |
Alig confidence |   |
|
| . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|   | . | . | . | . | . | . | . |   |
|   |   |
|
|   |   |   |   |   |
|   |   |
|   |   |   |   |   |   |   |
|   |
|   |   |   |   |
|
|
|   |   |   |   |   |   |
Template Sequence |   |
I | E | . |
. |
. |
. |
. |
. |
. |
D | A | D | M | Y | I | A | V | T | G | K | E | E | V | N | L | M | S | S | L | L | A | K | S | Y | G | I | N | K | T | I | A | R | I | S | E | I | E |
Template Known Secondary structure |   |
T | T | . | . | . | . | . | . | . | T |
| S |  |  |  |  |
|
| S |
|  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|
|  |  |  |  |
| S | S | T | T |
Template Predicted Secondary structure |   |
|
| . | . | . | . | . | . | . |
|
|
|  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |
|
|  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
63 | . | |
|
|
|
|
|
|
. | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|