Job Description P69434 Confidence 99.43% Date Thu Jan 5 12:11:38 GMT 2012 Rank 49 Aligned Residues 327 % Identity 8% Template c3ulqA_ PDB info PDB header:gene regulation/transcription activator Chain: A: PDB Molecule:response regulator aspartate phosphatase f; PDBTitle: crystal structure of the anti-activator rapf complexed with the2 response regulator coma dna binding domain Resolution 2.30 Å

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		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.				.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
Predicted Secondary structure																																							.	.	.																																	.	.	.	.	.	.	.	.
Query SS confidence																																							.	.	.																																	.	.	.	.	.	.	.	.
Query Sequence		A	K	S	A	V	N	N	A	Y	D	A	L	I	I	E	A	R	K	G	N	T	Q	P	A	L	S	W	F	A	L	K	S	A	L	S	N	N	.	.	.	Q	I	A	D	W	L	Q	I	A	L	W	A	G	Q	D	K	Q	V	I	T	V	Y	N	R	Y	R	H	Q	Q	L	P	A	.	.	.	.	.	.	.	.
Query Conservation																																							.	.	.																																	.	.	.	.	.	.	.	.
Alig confidence																																							.	.	.																																	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	S	S	S	I	G	E	K	I	N	E	W	Y	M	Y	I	R	R	F	S	I	P	D	A	E	Y	L	R	R	E	I	K	Q	E	L	D	Q	M	E	E	D	Q	D	L	H	L	Y	Y	S	L	M	E	F	R	H	N	L	M	L	E	Y	L	E	P	L	E	K	M	R	I	E	E	Q	P	R	L	S	D	L	L
Template Known Secondary structure																			T	T																		T	S																									G	G	G	G	G	S		G	G	G	S
Template Predicted Secondary structure
Template SS confidence
		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
																		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.							.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	R	G	Y	A	A	V	A	V	A	Y	R	N	L	Q	Q	W	Q	N	S	L	T	L	W	Q	K	A	L	S	L	E	P	Q	N	K	.	.	.	.	.	.	D	Y	Q	R	G	Q	I	L	T	L	A	D	A	G	H	Y	D	T	A	L	V	K	L	K
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																			.	.	.	.	.	.
Template Conservation
Template Sequence		L	E	I	D	K	K	Q	A	R	L	T	G	L	L	E	Y	Y	F	N	F	F	R	G	M	Y	E	L	D	Q	R	E	Y	L	S	A	I	K	F	F	K	K	A	E	S	K	L	I	F	V	K	D	R	I	E	K	A	E	F	F	F	K	M	S	E	S	Y	Y	Y	M	K	Q	T	Y	F	S	M	D	Y	A	R
Template Known Secondary structure								T																						T	T														T	T	G	G	G																					T	T
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	N	S	G	A	P	D	K	A	N	L	L	A	E	A	Y	I	Y	K	L	A	G	R	H	Q	D	E	L	R	A	M	T	E	S	L	P	E	N	A	S	T	Q	Q	Y	P	T	E	Y	V	Q	A	L	R	N	N	Q	L	A	A	A	I	D	D	A	N	L	T	P	D	I	R	A	D	I	H	A	E	L	V
Query Conservation
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	A	Y	E	I	Y	K	E	H	E	A	Y	N	I	R	L	L	Q	C	H	S	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	A	T	N	F	L	D	L	K	Q	Y	E	D	A	I	S	H	F	Q	K	A	Y	S	M	A	E	A	E	K	Q	P	Q	L
Template Known Secondary structure									T		S	T	T											.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								T	T																			T	T
Template Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		166	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.																										.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		237	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	S	F	M	P	T	R	S	E	S	E	R	Y	A	I	A	D	R	A	L	A	Q	Y	A	A	L	E	I	L	W	H	D	N	P	D	R	T	A	Q	Y	Q	R	I	Q	V	D	H	L	G	A	L	L	T	R	D	R	Y	K	D	V	I	S	H	Y	Q	R	L	K	K	T	G	Q	I	I	P	P	W	G	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	G	R	T	L	Y	N	I	G	L	C	K	N	S	Q	S	Q	Y	E	D	A	I	P	Y	F	K	R	A	I	A	V	F	E	E	S	N	I	L	P	S	L	P	Q	A	Y	F	L	I	T	Q	I	H	Y	K	L	G	K	I	D	K	A	H	E	Y	H	S	K	G	M	A	Y	S	Q	K	A	G	D	V	I	Y
Template Known Secondary structure																T	T																			T	T		G	G	G															T	T																				T
Template Predicted Secondary structure
Template SS confidence
		221	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
		317	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.		.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.
Predicted Secondary structure																											.
Query SS confidence																											.
Query Sequence		Y	W	V	A	S	A	Y	L	K	D	H	Q	P	K	K	A	Q	S	I	M	T	E	L	F	Y	.	H	K	E	T	I	A	P	D	L	S	D	E	E	L	A	D	L	F	Y	S	H	L	E	S	E	N	Y	P	G	A	L	T	V	T	Q	H	T	I	N	T
Query Conservation																											.
Alig confidence																											.
Template Conservation
Template Sequence		L	S	E	F	E	F	L	K	S	L	Y	L	S	G	P	D	E	E	A	I	Q	G	F	F	D	F	L	E	S	K	M	L	Y	A	D	L	E	D	F	A	I	D	V	A	K	Y	Y	H	E	R	K	N	F	Q	K	A	S	A	Y	F	L	K	V	E	Q	V
Template Known Secondary structure													T	S	S																T	T																			T	T
Template Predicted Secondary structure
Template SS confidence
		301	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions