Job Description P69434 Confidence 22.80% Date Thu Jan 5 12:11:38 GMT 2012 Rank 180 Aligned Residues 97 % Identity 7% Template c3spaA_ PDB info PDB header:transferase Chain: A: PDB Molecule:dna-directed rna polymerase, mitochondrial; PDBTitle: crystal structure of human mitochondrial rna polymerase Resolution 2.50 Å

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		64	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.						.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.		.	130	.	.	.	.	.	.	.
Predicted Secondary structure																														.	.	.	.	.																																						.
Query SS confidence																														.	.	.	.	.																																						.
Query Sequence		S	N	N	Q	I	A	D	W	L	Q	I	A	L	W	A	G	Q	D	K	Q	V	I	T	V	Y	N	R	Y	.	.	.	.	.	R	H	Q	Q	L	P	A	R	G	Y	A	A	V	A	V	A	Y	R	N	L	Q	Q	W	Q	N	S	L	T	L	W	Q	K	A	L	S	L	E	.	P	Q	N	K	D	Y	Q	R	G
Query Conservation																														.	.	.	.	.																																						.
Alig confidence																														.	.	.	.	.																																						.
Template Conservation
Template Sequence		Q	Q	Q	R	L	L	A	F	F	K	C	C	L	L	T	D	Q	L	P	L	A	H	H	L	L	V	V	H	H	G	Q	R	Q	K	R	K	L	L	T	L	D	M	Y	N	A	V	M	L	G	W	A	R	Q	G	A	F	K	E	L	V	Y	V	L	F	M	V	K	D	A	G	L	T	P	D	L	L	S	Y	A	A
Template Known Secondary structure																	T															S					T	T																	T															T	T
Template Predicted Secondary structure
Template SS confidence
		222	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	I	L	T	L	A	D	A	G	H	Y	D	T	A	L	V	K	L	K	Q	L	N	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	L	Q	C	M	G	R	Q	D	Q	D	A	G	T	I	E	R	C	L	E	Q	M	S
Template Known Secondary structure										T
Template Predicted Secondary structure
Template SS confidence
		302	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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