Job Description P69434 Confidence 85.26% Date Thu Jan 5 12:11:38 GMT 2012 Rank 148 Aligned Residues 247 % Identity 11% Template c3ohnA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:outer membrane usher protein fimd; PDBTitle: crystal structure of the fimd translocation domain Resolution 3.01 Å

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		549	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.		.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.
Predicted Secondary structure																																																												.
Query SS confidence																																																												.
Query Sequence		P	P	L	K	D	N	W	R	G	F	A	G	F	G	Y	A	D	G	Q	F	S	E	G	K	G	I	V	R	D	W	L	A	G	V	E	W	R	S	R	N	I	W	L	E	A	E	Y	A	E	R	V	F	N	H	E	H	K	P	.	G	A	R	L	S	G	W	Y	D	F	N	D	N	W	R	I	G	S	Q	L	E
Query Conservation																																																												.
Alig confidence																																																												.
Template Conservation
Template Sequence		Y	A	A	G	N	S	G	D	L	Q	V	T	I	K	E	A	D	G	S	T	Q	I	F	T	V	P	Y	S	S	V	P	L	L	Q	R	E	G	H	T	R	Y	S	I	T	A	G	E	Y	R	S	G	N	A	Q	Q	E	K	P	R	F	F	Q	S	T	L	L	H	G	L	P	A	G	W	T	I	Y	G	G	T	Q
Template Known Secondary structure				T	T	T	T	S									S	S	S																		T	T															S	T	T																G	G	G
Template Predicted Secondary structure
Template SS confidence
		291	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370
		628	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	S	H	R	V	P	L	R	A	M	K	N	G	V	T	G	N	S	A	Q	A	Y	V	R	W	Y	Q	N	E	R	R	K	Y	G	V	S	W	A	F	T	D	F	S	D	S	N	Q	R	H	E	V	S	L	E	G	Q	E	R	I	W	S	S	P	Y	L	I	V	D	F	L	P	S	L	Y	Y	E	Q	N	T
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.
Template Sequence		L	A	D	.	.	.	.	.	.	.	.	.	.	R	Y	R	A	F	N	F	G	I	G	K	N	M	G	A	L	G	A	L	S	V	D	M	T	Q	A	N	S	T	L	P	D	D	S	Q	H	D	G	Q	S	V	R	F	L	Y	N	K	S	L	G	T	N	I	Q	L	V	G	Y	R	Y	S	T	S	G	Y	F	N
Template Known Secondary structure				S	.	.	.	.	.	.	.	.	.	.	S														T	T															T	T																															T	T
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.
Template SS confidence
		371	.	.											.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440
		708	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	H	D	T	P	Y	Y	N	P	I	K	T	F	D	I	V	P	A	F	E	A	S	H	L	L	W	R	S	Y	E	N	S	W	E	Q	I	F	S	A	G	V	G	A	S	W	Q	K	H	Y	G	T	D	V	V	T	Q	L	G	Y	G	Q	R	I	S	W	N	D	V	I	D	A	G	A	T	L	R	W	E	K	R
Query Conservation
Alig confidence																																																						.																.
Template Conservation																																																						.																.
Template Sequence		F	A	D	T	T	Y	S	R	M	N	G	T	D	Y	Y	N	L	A	Y	N	K	R	G	K	L	Q	L	T	V	T	Q	Q	L	G	R	T	S	T	L	Y	L	S	G	S	H	Q	T	Y	W	G	T	S	.	N	V	D	E	Q	F	Q	A	G	L	N	T	A	F	E	.	D	I	N	W	T	L	S	Y	S	L	T
Template Known Secondary structure						S	S		S									T	T	S															T	T	T													S	S	S		.															S	.	S
Template Predicted Secondary structure																																																						.																.
Template SS confidence
		444	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.		.	.	.	.	500	.	.	.	.	.	.	.	.	.	510		.	.	.	.	.	.	.	.	.	520	.
		788	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	Y	D	G	D	R	E	H	N	L	Y	V	E	F	D	M	T	F	R	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	N	A	W	Q	K	G	R	D	Q	M	L	A	L	N	V	N	I	P	F
Template Known Secondary structure				T	T	T
Template Predicted Secondary structure
Template SS confidence
		538	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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