Job Description P69434 Confidence 85.89% Date Thu Jan 5 12:11:38 GMT 2012 Rank 146 Aligned Residues 171 % Identity 15% Template c3nsgA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein f; PDBTitle: crystal structure of ompf, an outer membrane protein from salmonella2 typhi Resolution 2.79 Å

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		517	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.						.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.
Predicted Secondary structure																																																					.	.	.	.	.
Query SS confidence																																																					.	.	.	.	.
Query Sequence		L	A	E	L	R	I	A	G	S	T	G	I	D	A	E	G	P	D	S	G	K	H	D	V	D	L	T	T	I	V	Y	S	P	P	L	K	D	N	W	R	G	F	A	G	F	G	Y	A	D	G	Q	.	.	.	.	.	F	S	E	G	K	G	I	V	R	D	W	L	A	G	V	E	W	R	S	R	N	I	W	L
Query Conservation																																																					.	.	.	.	.
Alig confidence																																																					.	.	.	.	.
Template Conservation
Template Sequence		V	D	G	L	S	F	G	I	Q	Y	Q	G	K	N	Q	D	N	H	S	I	N	S	Q	N	G	D	G	V	G	Y	T	X	A	Y	E	F	D	G	F	G	V	T	A	A	Y	S	N	S	K	R	T	N	D	Q	Q	D	R	D	G	N	G	D	R	A	E	S	R	A	V	G	A	K	Y	D	A	N	N	V	Y	L
Template Known Secondary structure			S	S											B		S	S	S		G	G	G		B		S											T	T														S	T	T	S	S	S	S	S			S														T	T
Template Predicted Secondary structure
Template SS confidence
		146	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.
		592	.	.	.	.	.	.	.	600	.	.	.														.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		E	A	E	Y	A	E	R	V	F	N	H	E	.	.	.	.	.	.	.	.	.	.	.	.	.	H	K	P	G	A	R	L	S	G	W	Y	D	F	N	D	N	W	R	I	G	S	Q	L	E	R	L	S	H	R	V	P	L	R	A	M	K	N	G	V	T	G	N	S	A	Q	A	Y	V	R	W	Y	Q	N	E	R
Query Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	A	V	Y	A	E	T	R	N	X	S	I	V	E	N	T	V	T	D	T	V	E	X	A	N	K	T	Q	N	L	E	V	V	A	Q	Y	Q	F	D	F	G	L	R	P	A	I	S	Y	V	Q	S	K	G	K	Q	L	N	G	A	G	G	S	A	D	L	A	K	Y	I	Q	A	G	A	T	Y	Y	F	N	K	N
Template Known Secondary structure									S	S							T	T	T							S														T	T	S														S		T	T	T	T	S																		S	S
Template Predicted Secondary structure
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.
		659	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.								.	.	.	680	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.	.	.	.
Query SS confidence																				.	.	.	.	.	.	.
Query Sequence		R	K	Y	G	V	S	W	A	F	T	D	F	S	D	S	N	Q	R	.	.	.	.	.	.	.	H	E	V	S	L	E	G	Q	E	R	I
Query Conservation																				.	.	.	.	.	.	.
Alig confidence																				.	.	.	.	.	.	.
Template Conservation
Template Sequence		X	N	V	W	V	D	Y	R	F	N	L	L	D	E	N	D	Y	S	S	S	Y	V	G	T	D	D	Q	A	A	V	G	I	T	Y	Q	F
Template Known Secondary structure																	S	S		T	T	T	T		S	S
Template Predicted Secondary structure
Template SS confidence
		306	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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