Return to main results Retrieve Phyre Job Id

Job DescriptionP69434
Confidence99.75%DateThu Jan 5 12:11:38 GMT 2012
Rank26Aligned Residues267
% Identity13%Templatec3mv3B_
PDB info PDB header:protein transportChain: B: PDB Molecule:coatomer subunit epsilon; PDBTitle: crystal structure of a-cop in complex with e-cop
Resolution3.25 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   106...110.........120.........130.........140.........150.........160.........170.........180.....
Predicted Secondary structure 

















Query SS confidence 















































































Query Sequence  VAYRNLQQWQNSLTLWQKALSLEPQNKDYQRGQILTLADAGHYDTALVKLKQLNSGAPDKANLLAEAYIYKLAGRHQDEL
Query Conservation        
    
   
  

   
    
   

      
   

   
   
   
        
  
        
 
Alig confidence 






















































.........................
Template Conservation     
  
 
  

                    
   
              

 .........................
Template Sequence  KQNYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQDPTSKLGKVLD. . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TTT
TSTT


SS





S
STT.........................
Template Predicted Secondary structure 













.........................
Template SS confidence 















































































   7..10.........20.........30.........40.........50.........60.
 
   186...190.........200.........210.........220.........230.........240.........250.........260.....
Predicted Secondary structure 










Query SS confidence 















































































Query Sequence  RAMTESLPENASTQQYPTEYVQALRNNQLAAAIDDANLTPDIRADIHAELVRLSFMPTRSESERYAIADRALAQYAALEI
Query Conservation                         
       
                                                
Alig confidence  ....................................................................











Template Conservation  ....................................................................            
Template Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . LYVQFLDTKNIE
Template Known Secondary structure  ....................................................................TSS

Template Predicted Secondary structure  ....................................................................



Template SS confidence 















































































   62.......70...
 
   266...270.........280.........290.........300.........310.........320.........330.........340.....
Predicted Secondary structure 



















Query SS confidence 















































































Query Sequence  LWHDNPDRTAQYQRIQVDHLGALLTRDRYKDVISHYQRLKKTGQIIPPWGQYWVASAYLKDHQPKKAQSIMTELFYHKET
Query Conservation                        
        
                                  
             
Alig confidence 











































....................................
Template Conservation                    

      
    

      
    ....................................
Template Sequence  ELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDE. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Template Known Secondary structure  TTTTS


T
TTTT....................................
Template Predicted Secondary structure 











....................................
Template SS confidence 















































































   74.....80.........90.........100.........110.......
 
   346...350.........360.........370.........380.........390.........400.........410.........420.....
Predicted Secondary structure 




















Query SS confidence 















































































Query Sequence  IAPDLSDEELADLFYSHLESENYPGALTVTQHTINTSPPFLRLMGTPTSIPNDTWLQGHSFLSTVAKYSNDLPQAEMTAR
Query Conservation              

 
    
   

   
   
   
                        
      
    
   
 
Alig confidence  ..













































.......
























Template Conservation  ..          

           
       
              .......      
            
     
Template Sequence  . . AEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEXI. . . . . . . LNLAESYIKFATNKETATSNFYYYE
Template Known Secondary structure  ..SSSTT
TT
TTT

SST.......
TTTTT
Template Predicted Secondary structure  ..











.......


Template SS confidence 















































































   118.120.........130.........140.........150.........160... ......170.........180........
 
   426...430.........440.........450.........460.... .....470.........480.........490.....
Predicted Secondary structure 






..........






Query SS confidence 






































. . . . . . . . . .






























Query Sequence  ELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVI. . . . . . . . . . EPRNINLEVEQAWTALTLQEWQQAAVLTHDV
Query Conservation   

   
        

      
    
      

 
.......... 
    
    
     
     
       
Alig confidence 






.






























..........



















..








Template Conservation         .       
       
    
      

                   
 
          .. 
  
    
Template Sequence  ELSQTFP. TWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALXQGL. . DTEDLTNQL
Template Known Secondary structure  S
.STT
STTT
TTTT
..TT
Template Predicted Secondary structure 


.










..
Template SS confidence 















































































   189190..... ....200.........210.........220.........230.........240.........250...... ...260.....
 
   496...500.........510...
Predicted Secondary structure 



Query SS confidence 

















Query Sequence  VEREPQDPGVVRLKRAVD
Query Conservation      
       
     
Alig confidence 

















Template Conservation    
 
  
          
Template Sequence  VKLDHEHAFIKHHQEIDA
Template Known Secondary structure  TT

S
Template Predicted Secondary structure 




Template SS confidence 

















   266...270.........280...
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions