Job Description P69434 Confidence 42.24% Date Thu Jan 5 12:11:38 GMT 2012 Rank 155 Aligned Residues 156 % Identity 17% Template c3mkrB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:coatomer subunit alpha; PDBTitle: crystal structure of yeast alpha/epsilon-cop subcomplex of the copi2 vesicular coat Resolution 2.60 Å

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		358	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.																																						.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
Predicted Secondary structure																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	F	Y	S	H	L	E	S	E	N	Y	P	G	A	L	T	V	T	Q	H	T	I	N	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	P	P	F	L	R	L	M	G	T	P	T	S	I	P	N	D	T	W
Query Conservation																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	P	V	D	H	I	L	A	G	S	F	E	T	A	M	R	L	L	H	D	Q	V	G	V	T	Q	F	G	P	Y	K	Q	L	F	L	Q	T	Y	A	R	G	R	T	T	Y	Q	A	L	P	C	L	P	S	M	Y	G	Y	P	N	R	N	W	K	D	A	G	L	K	N	G	V	P	A	V	G	L	K	L	N	D
Template Known Secondary structure									T	T													S		B				G	G	G									T	T	S						S	S	T	T	S								B	T	T	T	T	T			S	S	S			B
Template Predicted Secondary structure
Template SS confidence
		926	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.																				.	.	.	.	440	.	.	.	.	.	.	.				.	.	450	.	.	.	.	.	.	.	.
Predicted Secondary structure																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.
Query SS confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.
Query Sequence		L	Q	G	H	S	F	L	S	T	V	A	K	Y	S	N	D	L	P	Q	A	E	M	T	A	R	E	L	A	Y	N	A	P	G	N	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	R	I	D	Y	A	S	V	L	Q	A	.	.	.	R	G	W	P	R	A	A	E	N	E	L
Query Conservation																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.
Alig confidence																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.													.	.	.
Template Conservation
Template Sequence		L	I	Q	R	L	Q	L	C	Y	Q	L	T	T	V	G	K	F	E	E	A	V	E	K	F	R	S	I	L	L	S	V	P	L	L	V	V	D	N	K	Q	E	I	A	E	A	Q	Q	L	I	T	I	C	R	E	Y	I	V	G	L	S	M	E	T	E	R	K	K	L	P	K	E	T	L	E	Q	Q	K	R	I	C
Template Known Secondary structure															T	T																G	G	G					S																												T	T	S				S
Template Predicted Secondary structure
Template SS confidence
		1006	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.
		459	460	.						.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.		.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.
Predicted Secondary structure					.	.	.	.	.																	.
Query SS confidence					.	.	.	.	.																	.
Query Sequence		K	K	A	.	.	.	.	.	E	V	I	E	P	R	N	I	N	L	E	V	E	Q	A	W	.	T	A	L	T	L	Q	E	W	Q	Q	A	A	V	L	T	H	D	V	V	E	R	E	P	Q	D	P	G	V	V	R	L	K	R	A	V	D
Query Conservation					.	.	.	.	.																	.
Alig confidence					.	.	.	.	.																	.
Template Conservation
Template Sequence		E	M	A	A	Y	F	T	H	S	N	L	Q	P	V	H	M	I	L	V	L	R	T	A	L	N	L	F	F	K	L	K	N	F	R	T	A	A	A	F	A	R	R	L	L	E	L	G	P	K	P	E	V	A	Q	Q	T	R	K	I	L	S
Template Known Secondary structure								T	T	S																					T	T	B														T
Template Predicted Secondary structure
Template SS confidence
		1086	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions