Job Description P69434 Confidence 88.03% Date Thu Jan 5 12:11:38 GMT 2012 Rank 145 Aligned Residues 111 % Identity 19% Template c3mkqB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:coatomer subunit alpha; PDBTitle: crystal structure of yeast alpha/betaprime-cop subcomplex of the copi2 vesicular coat Resolution 2.50 Å

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		356	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.
Predicted Secondary structure																																																																										.	.	.	.	.	.	.	.
Query SS confidence																																																																										.	.	.	.	.	.	.	.
Query Sequence		A	D	L	F	Y	S	H	L	E	S	E	N	Y	P	G	A	L	T	V	T	Q	H	T	I	N	T	S	P	P	F	L	R	L	M	G	T	P	T	S	I	P	N	D	T	W	L	Q	G	H	S	F	L	S	T	V	A	K	Y	S	N	D	L	P	Q	A	E	M	T	A	R	E	L	.	.	.	.	.	.	.	.
Query Conservation																																																																										.	.	.	.	.	.	.	.
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.	.	.	.	.	.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		H	I	R	F	D	L	A	L	E	Y	G	N	L	D	A	A	L	D	E	A	K	K	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	D	S	I	T	W	E	R	L	I	Q	E	A	L	A	Q	G	N	A	S	L	A	E	M	I	Y	Q	T	Q	H	S	F	D	K	L	S	F
Template Known Secondary structure											T	T													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																T	T												T	T
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.																					.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.
		428	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	Y	N	A	P	G	N	Q	G	L	R	I	D	Y	A	S	V	L	Q	A	R	G	W	P	R	A	A	E	N	E	L	K	K	A	E	V	I	E	P	R	N	I	N	L	E	V	E	Q	A	W	T	A	L	T	L	Q	E	W	Q	Q	A	A	V	L	T	H	D
Query Conservation
Alig confidence																																			.	.	.	.	.	.	.	.
Template Conservation																																			.	.	.	.	.	.	.	.
Template Sequence		L	Y	L	V	T	G	D	V	N	K	L	S	K	M	Q	N	I	A	Q	T	R	E	D	F	G	S	M	L	L	N	T	F	Y	.	.	.	.	.	.	.	.	N	N	S	T	K	E	R	S	S	I	F	A	E	G	G	S	L	P	L	A	Y	A	V	A	K	A
Template Known Secondary structure							T															T	T												.	.	.	.	.	.	.	.		T												T	T
Template Predicted Secondary structure																																			.	.	.	.	.	.	.	.
Template SS confidence
		710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.									.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions