Job Description P69434 Confidence 97.30% Date Thu Jan 5 12:11:38 GMT 2012 Rank 108 Aligned Residues 137 % Identity 12% Template c3mkqA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:coatomer beta'-subunit; PDBTitle: crystal structure of yeast alpha/betaprime-cop subcomplex of the copi2 vesicular coat Resolution 2.50 Å

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		72	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.									.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.
Predicted Secondary structure																																																						.	.	.	.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.	.	.	.
Query Sequence		L	Q	I	A	L	W	A	G	Q	D	K	Q	V	I	T	V	Y	N	R	Y	R	H	Q	Q	L	P	A	R	G	Y	A	A	V	A	V	A	Y	R	N	L	Q	Q	W	Q	N	S	L	T	L	W	Q	K	.	.	.	.	.	.	.	.	A	L	S	L	E	P	Q	N	K	D	Y	Q	R	G	Q	I	L	T	L	A
Query Conservation																																																						.	.	.	.	.	.	.	.
Alig confidence																				.	.	.	.																															.	.	.	.	.	.	.	.
Template Conservation																				.	.	.	.
Template Sequence		F	E	L	A	L	K	V	G	Q	L	T	L	A	R	D	L	L	T	.	.	.	.	D	E	S	A	E	M	K	W	R	A	L	G	D	A	S	L	Q	R	F	N	F	K	L	A	I	E	A	F	T	N	A	H	D	L	E	S	L	F	L	L	H	S	S	F	N	N	K	E	G	L	V	T	L	A	K	D	A	E
Template Known Secondary structure									T										T	.	.	.	.	T																	T	T													T												T	T
Template Predicted Secondary structure																				.	.	.	.
Template SS confidence
		659	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.					.	.	.	680	.	.	.	.	.	.	.	.	.	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	G	H	Y	D	T	A	L	V	K	L	K	Q	L	N	S	G	A	P	D	K	A	N	L	L	A	E	A	Y	I	Y	K	L	A	G	R	H	Q	D	E	L	R	A	M	T	E	S	L	P	E	N	A	S	T	Q	Q	Y	P	T	E	Y	V	Q	A	L	R	N	N	Q	L	A	A	A	I	D
Query Conservation
Alig confidence																			.	.	.	.	.	.	.
Template Conservation																			.	.	.	.	.	.	.
Template Sequence		T	T	G	K	F	N	L	A	F	N	A	Y	W	I	A	G	D	.	.	.	.	.	.	.	I	Q	G	A	K	D	L	L	I	K	S	Q	R	F	S	E	A	A	F	L	G	S	T	Y	G	L	G	D	N	E	V	N	D	I	V	T	K	W	K	E	N	L	I	L	N	G	K	N	T	V	S	E
Template Known Secondary structure			T	T													T		.	.	.	.	.	.	.											T	T												T	T																			T	T	T						T
Template Predicted Secondary structure																			.	.	.	.	.	.	.
Template SS confidence
		735	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.								.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.	770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions