Job Description P69434 Confidence 93.95% Date Thu Jan 5 12:11:38 GMT 2012 Rank 131 Aligned Residues 240 % Identity 10% Template c3e4bD_ PDB info PDB header:protein binding Chain: D: PDB Molecule:algk; PDBTitle: crystal structure of algk from pseudomonas fluorescens wcs374r Resolution 2.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		49	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.		80	.	.	.	.	.	.	.	.	.	90		.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.				110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure																																	.												.																				.	.	.
Query SS confidence																																	.												.																				.	.	.
Query Sequence		N	T	Q	P	A	L	S	W	F	A	L	K	S	A	L	S	N	N	Q	I	A	D	W	L	Q	I	A	L	W	A	G	.	Q	D	K	Q	V	I	T	V	Y	N	R	.	Y	R	H	Q	Q	L	P	A	R	G	Y	A	A	V	A	V	A	Y	R	.	.	.	N	L	Q	Q	W	Q	N	S	L	T	L	W	Q	K
Query Conservation																																	.												.																				.	.	.
Alig confidence																																	.												.																				.	.	.
Template Conservation
Template Sequence		H	L	D	D	V	E	R	I	C	K	A	A	L	N	T	T	D	I	C	Y	V	E	L	A	T	V	Y	Q	K	Q	P	E	Q	Q	A	E	L	L	K	Q	M	E	A	G	V	S	R	G	T	V	T	A	Q	R	V	D	S	V	A	R	V	L	G	D	A	T	L	G	T	P	D	E	K	T	A	Q	A	L	L	E
Template Known Secondary structure														T	T	T		T	T													G	G	G															T		S													T		T	T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.				.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200
Predicted Secondary structure																											.	.	.
Query SS confidence																											.	.	.
Query Sequence		A	L	S	L	E	P	Q	N	K	D	Y	Q	R	G	Q	I	L	T	L	A	D	A	G	H	Y	.	.	.	D	T	A	L	V	K	L	K	Q	L	N	S	G	A	P	D	K	A	N	L	L	A	E	A	Y	I	Y	K	L	A	G	R	H	Q	D	E	L	R	A	M	T	E	S	L	P	E	N	A	S	T	Q	Q
Query Conservation																											.	.	.
Alig confidence					.	.																					.	.	.
Template Conservation					.	.
Template Sequence		K	I	A	.	.	P	G	Y	P	A	S	W	V	S	L	A	Q	L	L	Y	D	F	P	E	L	G	D	V	E	Q	M	M	K	Y	L	D	N	G	R	A	A	D	Q	P	R	A	E	L	L	L	G	K	L	Y	Y	E	G	K	W	V	P	A	D	A	K	A	A	E	A	H	F	E	K	A	V	G	R	E	V	A
Template Known Secondary structure				T	.	.	T	T	S	T														T	T	S																T	T																S	S	S													T	T	T	T	T
Template Predicted Secondary structure					.	.
Template SS confidence
		242	.	.			.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
		201	.	.	.	.	.	.	.	.	210	.	.						.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.
Predicted Secondary structure														.	.	.	.	.
Query SS confidence														.	.	.	.	.
Query Sequence		Y	P	T	E	Y	V	Q	A	L	R	N	N	.	.	.	.	.	Q	L	A	A	A	I	D	D	A	N	L	T	P	D	I	R	A	D	I	H	A	E	L	V	R	L	S	F	M	P	T	R	S	E	S	E	R	Y	A	I	A	D	R	A	L	A	Q	Y	A	A	L	E	I	L	W	H	D	N	P	D	R	T	A
Query Conservation														.	.	.	.	.
Alig confidence														.	.	.	.	.
Template Conservation
Template Sequence		A	D	Y	Y	L	G	Q	I	Y	R	R	G	Y	L	G	K	V	Y	P	Q	K	A	L	D	H	L	L	T	A	A	R	N	G	Q	N	S	A	D	F	A	I	A	Q	L	F	S	Q	G	K	G	T	K	P	D	P	L	N	A	Y	V	F	S	Q	L	A	K	A	T	P	E	A	N	D	L	A	T	Q	L	E	A
Template Known Secondary structure													T	T	T	S	S																T	T		T	T									T	T	S		T	T	S														T	T														T
Template Predicted Secondary structure
Template SS confidence
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
		276	.	.	.	280	.	.	.	.	.	.	.	.	.	290
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	Y	Q	R	I	Q	V	D	H	L	G	A	L	L	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	L	T	P	A	Q	R	A	E	G	Q	R	L	V	Q
Template Known Secondary structure		T	S
Template Predicted Secondary structure
Template SS confidence
		402	.	.	.	.	.	.	.	410	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions