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Job DescriptionP69434
Confidence99.96%DateThu Jan 5 12:11:38 GMT 2012
Rank6Aligned Residues379
% Identity13%Templatec2y4tA_
PDB info PDB header:chaperoneChain: A: PDB Molecule:dnaj homolog subfamily c member 3; PDBTitle: crystal structure of the human co-chaperone p58(ipk)
Resolution3.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   98.100.........110.........120.........130.........140.........150.........160......... 170......
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Query Sequence  ARGYAAVAVAYRNLQQWQNSLTLWQKALSLEPQNKDYQRGQILTLADAGHYDTALVKLKQLNSGAPDKANLL. AEAYIYK
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Template Conservation   
    

      
    
      

   
        

      
    
      

 
 
    
   

    
Template Sequence  VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLL
Template Known Secondary structure  TT

TT
TT

TT
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   37..40.........50.........60.........70.........80.........90.........100.........110......
 
   177..180.........190.........200.........210.........220.........230.........240...... ...250..
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Query Sequence  LAGRHQDELRAMTESLPENASTQQYPTEYVQALRNNQLAAAIDDANLTPDIRADIHAELVRLSFMPTRSE. . . . SERYAI
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Template Conservation         
                                                                        
Template Sequence  KQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAE
Template Known Secondary structure  TT
TS


T

TT
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   117..120.........130.........140.........150.........160.........170.........180.........190......
 
   253......260.........270.........280.........290.........300.........310......... 320.
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Query Sequence  ADRALAQYAALEILWHDNPDRTAQYQRIQVDHLGALLTRDRYKDVISHYQRLKKTGQIIPPWGQYWV. . . . . . . . . . . AS
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Template Conservation                                                                                  
Template Sequence  CFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAE
Template Known Secondary structure  TT
GGGG
S
TT

TT
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   197..200.........210.........220.........230.........240.........250.........260.........270......
 
   322.......330.........340.........350.........360.........370.........380.........390.........400.
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Query Sequence  AYLKDHQPKKAQSIMTELFYHKETIAPDLSDEELADLFYSHLESENYPGALTVTQHTINTSPPFLRLMGTPTSIPNDTWL
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Template Sequence  ELIRDGRYTDATSKYESVMKTEP. SIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP. . . . . . . . . . . . . . . DNV
Template Known Secondary structure  T


.SSTTT

T...............T
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   277..280.........290......... 300.........310.........320.........330....... ..340
 
   402.......410.........420.........430.........440.........450.. .......460 ...
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Query Sequence  QGHSFLSTVAKYSNDLPQAEMTARELAYNAPGNQGLRIDYASVLQARGWPR. . . . . . . . . . . . . . . . . AAENELKK. AEV
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Template Conservation       

      
    
      

 
 
        
               
  
         
   

 
 

 
Template Sequence  NALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ
Template Known Secondary structure  TT
TTSSS
S

SGGGS
SSTT

TT
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   341........350.........360.........370.........380.........390.........400.........410.........420
 
   464.....470.........480.........490..
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Query Sequence  IEPRNINLEVEQAWTALTLQEWQQAAVLT
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Template Conservation    

          
      
 

   
Template Sequence  WHPDNFQNEEEKKKAEKKFIDIAAAKEVL
Template Known Secondary structure  S
GGG

SS
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   421........430.........440.........
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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