Job Description P69434 Confidence 28.50% Date Thu Jan 5 12:11:38 GMT 2012 Rank 174 Aligned Residues 245 % Identity 9% Template c2y0hA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:probable porin; PDBTitle: crystal structure of pseudomonas aeruginosa opdl Resolution 2.20 Å

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		541	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.											.	.	.	.	.	.	.	580	.	.	.	.	.		.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.														.
Query SS confidence																																		.	.	.	.	.	.	.	.	.	.														.
Query Sequence		D	L	T	T	I	V	Y	S	P	P	L	K	D	N	W	R	G	F	A	G	F	G	Y	A	D	G	Q	F	S	E	G	K	.	.	.	.	.	.	.	.	.	.	G	I	V	R	D	W	L	A	G	V	E	W	R	.	S	R	N	I	W	L	E	A	E	Y	A	E	R	V	F	N	H	E	H	K	P	G	A	R
Query Conservation																																		.	.	.	.	.	.	.	.	.	.														.
Alig confidence																																		.	.	.	.	.	.	.	.	.	.														.												.
Template Conservation																																																																					.
Template Sequence		T	F	D	G	A	L	L	T	S	S	E	I	E	G	L	T	L	T	A	G	Q	L	W	K	S	R	T	R	E	S	D	D	M	Y	I	M	G	R	D	K	A	H	A	S	D	E	F	N	L	A	G	A	T	Y	A	F	T	P	R	L	S	A	S	Y	Y	Y	G	.	Q	L	K	D	I	Y	R	Q	H	Y	L	G
Template Known Secondary structure													S	T	T																			B		B	T	T	S		T	T	S		B	S											S	S	S	S									.			T	T	T
Template Predicted Secondary structure																																																																					.
Template SS confidence
		129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.		.	.	.	.	200	.	.	.	.	.	.	.
		610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	G	W	Y	D	F	N	D	N	W	R	I	G	S	Q	L	E	R	L	S	H	R	V	P	L	R	A	M	K	N	G	V	T	G	N	S	A	Q	A	Y	V	R	W	Y	Q	N	E	R	R	K	Y	G	V	S	W	A	F	T	D	F	S	D	S	N	Q	R	H	E	V	S	L	E	G	Q	E	R	I	W	S
Query Conservation
Alig confidence																																																	.	.	.																	.	.	.	.	.	.
Template Conservation																																																	.	.	.																	.	.	.	.	.	.
Template Sequence		L	L	H	T	L	P	L	G	E	G	L	S	L	R	S	D	L	R	Y	F	D	S	G	E	D	G	A	A	I	S	G	P	V	D	N	R	N	L	N	A	M	L	T	L	R	A	G	.	.	.	A	H	A	F	G	I	G	V	Q	K	M	I	G	N	D	A	.	.	.	.	.	.	F	P	V	L	N	G	Y	T
Template Known Secondary structure									S	T	T																T	T		T	T																	T	.	.	.	T												S	S	S		.	.	.	.	.	.				B	T	T	T
Template Predicted Secondary structure																																																	.	.	.																	.	.	.	.	.	.
Template SS confidence
		211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.				.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.							.	.	.	.	.	.	280	.
		690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	P	Y	L	I	V	D	F	L	P	S	L	Y	Y	E	Q	N	T	E	H	D	T	P	Y	Y	N	P	I	K	T	F	D	I	V	P	A	F	E	A	S	H	L	L	W	R	S	Y	E	N	S	W	E	Q	I	F	S	A	G	V	G	A	S	W	Q	K	H	Y	G	T	D	V	V	T	Q	L	G	Y	G	Q	R
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		T	P	Y	.	.	.	.	.	.	.	.	.	.	.	.	V	A	N	L	M	A	Y	Q	T	F	T	R	P	Q	E	K	S	W	Q	L	R	Y	D	Y	D	F	A	G	L	G	L	P	G	L	N	L	M	T	R	Y	V	Q	G	R	D	I	D	R	G	A	G	R	A	D	D	S	E	W	E	R	N	T	D	L	S
Template Known Secondary structure		B			.	.	.	.	.	.	.	.	.	.	.	.		T	T			S	S			S		S	T	T													T	T	T	T		T	T																S	T	T
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		282	.	.													.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.
		770	.	.	.	.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.		.	.	.	800	.	.	.	.	.	.	.
Predicted Secondary structure																													.
Query SS confidence																													.
Query Sequence		I	S	W	N	D	V	I	D	A	G	A	T	L	R	W	E	K	R	P	Y	D	G	D	R	E	H	N	.	L	Y	V	E	F	D	M	T	F	R	F
Query Conservation																													.
Alig confidence																													.
Template Conservation
Template Sequence		Y	V	I	Q	S	G	P	L	K	S	V	A	L	K	W	R	N	I	T	Y	R	S	R	Y	G	A	D	L	D	E	N	R	F	I	V	N	Y	T	L
Template Known Secondary structure						S	S	T	T	T	T													S	S	S
Template Predicted Secondary structure
Template SS confidence
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions