Job Description P69434 Confidence 99.91% Date Thu Jan 5 12:11:38 GMT 2012 Rank 10 Aligned Residues 371 % Identity 9% Template c2uy1A_ PDB info PDB header:rna-binding protein Chain: A: PDB Molecule:cleavage stimulation factor 77; PDBTitle: crystal structure of cstf-77 Resolution 2.0 Å

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		96	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	P	A	R	G	Y	A	A	V	A	V	A	Y	R	N	L	Q	Q	W	Q	N	S	L	T	L	W	Q	K	A	L	S	L	E	P	Q	N	K	D	Y	Q	R	G	Q	I	L	T	L	A	D	A	G	H	Y	D	T	A	L	V	K	L	K	Q	L	N	S	G	A	P	D	K	A	N	L	L	A	E	A	Y	I	Y
Query Conservation
Alig confidence																																				.
Template Conservation																																				.
Template Sequence		S	S	P	S	A	I	M	E	H	A	R	R	L	Y	M	S	K	D	Y	R	S	L	E	S	L	F	G	R	C	L	K	K	S	Y	.	N	L	D	L	W	M	L	Y	I	E	Y	V	R	K	V	S	K	L	Y	E	V	Y	E	F	T	L	G	Q	F	E	N	Y	W	D	S	Y	G	L	Y	K	E	Y	I	E	E
Template Known Secondary structure																	T	T													S	T	T			.																		T											S	T	T		T	T
Template Predicted Secondary structure																																				.
Template SS confidence
		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.		.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90
							176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.																																			.
Query SS confidence		.	.	.	.	.																																			.
Query Sequence		.	.	.	.	.	K	L	A	G	R	H	Q	D	E	L	R	A	M	T	E	S	L	P	E	N	A	S	T	Q	Q	Y	P	T	E	Y	V	Q	A	L	.	R	N	N	Q	L	A	A	A	I	D	D	A	N	L	T	P	D	I	R	A	D	I	H	A	E	L	V	R	L	S	F	M	P	T	R	S	E	S	E	R
Query Conservation		.	.	.	.	.																																			.
Alig confidence		.	.	.	.	.																																			.
Template Conservation
Template Sequence		E	G	K	I	E	D	E	Q	T	R	I	E	K	I	R	N	G	Y	M	R	A	L	Q	T	P	M	G	S	L	S	E	L	W	K	D	F	E	N	F	E	L	E	L	N	K	I	T	G	K	K	I	V	G	D	T	L	P	I	F	Q	S	S	F	Q	R	Y	Q	Q	I	Q	P	L	I	R	G	W	S	V	K	N
Template Known Secondary structure		T	S	S		S	S																	T	S			T	T																																															T		S
Template Predicted Secondary structure
Template SS confidence
		95	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		250	.	.	.	.	.	.											.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.
Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.
Query SS confidence									.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	A	I	A	D	R	A	.	.	.	.	.	.	.	.	.	.	L	A	Q	Y	A	A	L	E	I	L	W	H	D	N	P	D	R	T	A	Q	Y	Q	R	I	Q	V	D	H	L	G	A	L	L	T	R	D	R	Y	K	D	V	I	S	H	Y	Q	R	L	K	K	T	G	Q	I	I	P	P	W	G	Q	Y	W	V
Query Conservation									.	.	.	.	.	.	.	.	.	.
Alig confidence									.	.	.	.	.	.	.	.	.	.																																																							.	.
Template Conservation																																																																									.	.
Template Sequence		A	A	R	L	I	D	L	E	M	E	N	G	M	K	L	G	G	R	P	H	E	S	R	M	H	F	I	H	N	Y	I	L	D	S	F	Y	Y	A	E	E	V	Y	F	F	Y	S	E	Y	L	I	G	I	G	Q	K	E	K	A	K	K	V	V	E	R	G	I	E	M	S	D	G	.	.	M	F	L	S	L	Y	Y
Template Known Secondary structure											T		T	T																						T	T	T															T	T																		S	.	.	S
Template Predicted Secondary structure																																																																									.	.
Template SS confidence
		175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.			.	.	.	.	250	.	.
		320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	A	Y	L	K	D	H	Q	P	K	K	A	Q	S	I	M	T	E	L	F	Y	H	K	E	T	I	A	P	D	L	S	D	E	E	L	A	D	L	F	Y	S	H	L	E	S	E	N	Y	P	G	A	L	T	V	T	Q	H	T	I	N	T	S	P	P	F	L	R	L	M	G	T	P	T	S	I	P	N	D	T
Query Conservation
Alig confidence																							.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																							.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	L	V	M	D	E	E	A	V	Y	G	D	L	K	R	K	Y	S	F	S	K	.	.	.	.	.	.	.	.	.	E	L	D	L	L	R	I	N	H	L	N	Y	V	L	K	K	R	G	L	E	L	F	R	K	L	F	I	E	L	G	N	E	G	V	G	P	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure					T	T		T										T					.	.	.	.	.	.	.	.	.																														T	T	S					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																							.	.	.	.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.										.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
		400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	L	Q	G	H	S	F	L	S	T	V	A	K	Y	S	N	D	L	P	Q	A	E	M	T	A	R	E	L	A	Y	N	A	P	G	N	Q	G	L	R	I	D	Y	A	S	V	L	Q	A	R	G	W	P	R	A	A	E	N	E	L	K	K	A	E	V	I	E	P	R	N	I	N	L	E	V	E	Q	A	W	T	A
Query Conservation
Alig confidence		.																																																																			.	.	.	.
Template Conservation		.																																																																			.	.	.	.
Template Sequence		.	H	V	F	I	Y	C	A	F	I	E	Y	Y	A	T	G	S	R	A	T	P	Y	N	I	F	S	S	G	L	L	K	H	P	D	S	T	L	L	K	E	E	F	F	L	F	L	L	R	I	G	D	E	E	N	A	R	A	L	F	K	R	L	E	K	T	S	R	.	.	.	.	M	W	D	S	M	I	E	Y	E
Template Known Secondary structure		.																	S															T	T																T												S			B			.	.	.	.
Template Predicted Secondary structure		.																																																																			.	.	.	.
Template SS confidence
			320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.					.	.	.	.	390	.	.	.	.
		480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	L	Q	E	W	Q	Q	A	A	V	L	T	H	D	V	V	E
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	M	V	G	S	M	E	L	F	R	E	L	V	D	Q	K	M	D
Template Known Secondary structure					S
Template Predicted Secondary structure
Template SS confidence
		395	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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