Job Description P69434 Confidence 26.98% Date Thu Jan 5 12:11:38 GMT 2012 Rank 175 Aligned Residues 246 % Identity 7% Template c2odjA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:porin d; PDBTitle: crystal structure of the outer membrane protein oprd from pseudomonas2 aeruginosa Resolution 2.90 Å

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		541	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.		.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.		.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.
Predicted Secondary structure																												.																					.
Query SS confidence																												.																					.
Query Sequence		D	L	T	T	I	V	Y	S	P	P	L	K	D	N	W	R	G	F	A	G	F	G	Y	A	D	G	.	Q	F	S	E	G	K	G	I	V	R	D	W	L	A	G	V	E	W	R	S	.	R	N	I	W	L	E	A	E	Y	A	E	R	V	F	N	H	E	H	K	P	G	A	R	L	S	G	W	Y	D	F	N	D
Query Conservation																												.																					.
Alig confidence																												.																					.											.
Template Conservation																																																												.
Template Sequence		T	A	T	G	F	Q	L	Q	S	S	E	F	E	G	L	D	L	E	A	G	H	F	T	E	E	L	Y	A	T	Y	A	G	E	T	A	K	S	A	D	F	I	G	G	R	Y	A	I	T	D	N	L	S	A	S	L	Y	G	A	.	E	L	E	D	I	Y	R	Q	Y	Y	L	N	S	N	Y	T	I	P	L	A	S
Template Known Secondary structure													S	T	T															T	T	T					S											S	S	S	S									.			T	T	T																T
Template Predicted Secondary structure																																																												.
Template SS confidence
		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.		.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
		619	620	.	.	.	.	.	.	.	.	.	630	.	.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.	.	.	.	.	.	.	.	.	670	.	.	.	.	.	.	.	.	.	680	.	.	.	.											.	.	.	.
Predicted Secondary structure																																																																				.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																				.	.	.	.	.	.	.	.	.	.
Query Sequence		N	W	R	I	G	S	Q	L	E	R	L	S	H	R	V	P	L	R	A	M	K	N	G	V	T	G	N	S	A	Q	A	Y	V	R	W	Y	Q	N	E	R	R	K	Y	G	V	S	W	A	F	T	D	F	S	D	S	N	Q	R	H	E	V	S	L	E	G	Q	.	.	.	.	.	.	.	.	.	.	E	R	I	W
Query Conservation																																																																				.	.	.	.	.	.	.	.	.	.
Alig confidence																																								.	.	.																										.	.	.	.	.	.	.	.	.	.
Template Conservation																																								.	.	.
Template Sequence		D	Q	S	L	G	F	D	F	N	I	Y	R	T	N	D	E	G	K	A	K	A	G	D	I	S	N	T	T	W	S	L	A	A	A	Y	T	L	D	.	.	.	A	H	T	F	T	L	A	Y	Q	K	V	H	G	D	Q	P	F	D	Y	I	G	F	G	S	I	F	L	A	N	S	V	Q	Y	S	D	F	N	G	P
Template Known Secondary structure		T																T	T		S	S																	T	.	.	.	T												S	S	S											S	S	T	T			S	S						T
Template Predicted Secondary structure																																								.	.	.
Template SS confidence
		226	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.				.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
		689	690	.	.	.	.	.	.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.	.	.	.	.	.	.	.	.	720	.	.	.	.	.	.	.	.	.	730	.	.	.	.	.	.	.	.	.	740	.	.	.	.	.	.	.	.	.	750	.	.	.	.	.	.	.	.	.	760	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	S	P	Y	L	I	V	D	F	L	P	S	L	Y	Y	E	Q	N	T	E	H	D	T	P	Y	Y	N	P	I	K	T	F	D	I	V	P	A	F	E	A	S	H	L	L	W	R	S	Y	E	N	S	W	E	Q	I	F	S	A	G	V	G	A	S	W	Q	K	H	Y	G	T	D	V	V	T	Q	L	G	Y	G	Q
Query Conservation
Alig confidence														.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.
Template Conservation														.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.
Template Sequence		G	E	K	S	W	Q	A	R	Y	D	L	N	.	.	.	.	.	.	.	.	.	.	.	.	.	L	A	S	Y	G	V	P	G	L	T	F	X	V	R	Y	.	.	.	.	I	N	G	K	D	I	D	G	T	K	X	S	D	N	N	V	G	Y	K	N	Y	G	Y	G	E	D	G	K	H	H	E	T	N	L	E	A
Template Known Secondary structure		T												.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	S	S	S		T	T								.	.	.	.									T	T			S	S		T	T	T	S	S	S				S	S
Template Predicted Secondary structure														.	.	.	.	.	.	.	.	.	.	.	.	.																.	.	.	.
Template SS confidence
		312	.	.	.	.	.	.	.	320	.	.	.														.	.	.	.	.	.	330	.	.	.	.	.	.	.	.					.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.
		769	770	.	.	.					.	.	.	.	.	.	780	.	.	.	.	.	.	.	.	.	790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.
Query SS confidence							.	.	.	.
Query Sequence		R	I	S	W	N	.	.	.	.	D	V	I	D	A	G	A	T	L	R	W	E	K	R	P	Y	D	G	D	R	E	H	N	L	Y	V	E	F	D	M	T	F	R	F
Query Conservation							.	.	.	.
Alig confidence							.	.	.	.
Template Conservation
Template Sequence		K	Y	V	V	Q	S	G	P	A	K	D	L	S	F	R	I	R	Q	A	W	H	R	A	N	A	D	Q	G	E	G	D	Q	N	E	F	R	L	I	V	D	Y	P	L
Template Known Secondary structure							S	S	T	T	T	T														T	T	T	S	S		S	B
Template Predicted Secondary structure
Template SS confidence
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions