Job Description P69434 Confidence 99.80% Date Thu Jan 5 12:11:38 GMT 2012 Rank 20 Aligned Residues 471 % Identity 11% Template c1xi4D_ PDB info PDB header:endocytosis/exocytosis Chain: D: PDB Molecule:clathrin heavy chain; PDBTitle: clathrin d6 coat Resolution 7.90 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure																																																																								.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																								.	.	.	.	.	.	.	.	.	.
Query Sequence		S	S	S	R	K	R	C	P	K	T	K	W	A	L	K	L	L	T	A	A	F	L	A	A	S	P	A	A	K	S	A	V	N	N	A	Y	D	A	L	I	I	E	A	R	K	G	N	T	Q	P	A	L	S	W	F	A	L	K	S	A	L	S	N	N	Q	I	A	D	W	L	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																																								.	.	.	.	.	.	.	.	.	.
Alig confidence																																																																								.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	T	V	K	A	F	M	T	A	D	L	P	N	E	L	I	E	L	L	E	K	I	V	L	D	N	S	V	F	S	E	H	R	N	L	Q	N	L	L	I	L	T	A	I	K	A	D	R	T	R	V	M	E	Y	I	N	R	L	D	N	Y	D	A	P	D	I	A	N	I	A	I	S	N	E	L	F	E	E	A	F
Template Known Secondary structure		T	T	T					T	T	T		T	T	S									T	T		S	S	S	S																															S	S													T
Template Predicted Secondary structure
Template SS confidence
		990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.	.	.	.	.	.	.	.	.	1030	.	.	.	.	.	.	.	.	.	1040	.	.	.	.	.	.	.	.	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.											.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.
Query Sequence		Q	I	A	L	W	A	G	Q	D	K	Q	V	I	T	V	Y	.	.	.	.	.	.	.	.	.	.	N	R	Y	R	H	Q	Q	L	P	A	R	G	Y	A	A	V	A	V	A	Y	R	N	L	Q	Q	W	Q	N	S	L	T	L	W	Q	K	A	L	S	L	E	P	Q	N	K	D	Y	Q	R	G	Q	I	L	T	L
Query Conservation																		.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.																																					.	.	.	.	.
Template Conservation																																																																.	.	.	.	.
Template Sequence		A	I	F	R	K	F	D	V	N	T	S	A	V	Q	V	L	I	E	H	I	G	N	L	D	R	A	Y	E	F	A	E	R	C	N	E	P	A	V	W	S	Q	L	A	K	A	Q	L	Q	K	G	M	V	K	E	A	I	D	S	Y	I	K	A	.	.	.	.	.	D	D	P	S	S	Y	M	E	V	V	Q	A	A
Template Known Secondary structure							T	T												S													T		S		T															S	T	T	T							T	S	.	.	.	.	.							T
Template Predicted Secondary structure																																																																.	.	.	.	.
Template SS confidence
		1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.						.	.	.	.	.	.	.	.	1140	.	.	.	.
		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.																						.	190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		A	D	A	G	H	Y	D	T	A	L	V	K	L	K	Q	L	N	S	G	A	P	D	K	A	N	L	L	A	E	A	Y	I	Y	K	L	A	G	R	H	Q	D	E	L	R	A	M	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	E	S	L	P	E	N	A	S	T	Q	Q	Y
Query Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		N	T	S	G	N	W	E	E	L	V	K	Y	L	Q	M	A	R	K	K	A	R	E	S	Y	V	E	T	E	L	I	F	A	L	A	K	T	N	R	L	A	E	L	E	E	F	I	N	G	P	N	N	A	H	I	Q	Q	V	G	D	R	C	Y	D	E	K	M	Y	D	A	A	K	L	L	Y	N	N	V	S	N	F
Template Known Secondary structure				T	T													T	T	T				T	T											S	S	S											S				S													T											T	T	T
Template Predicted Secondary structure
Template SS confidence
		1145	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.	.	.	1210	.	.	.	.	.	.	.	.	.	1220	.	.	.	.
		202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.														.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.
Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																															.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		P	T	E	Y	V	Q	A	L	R	N	N	Q	L	A	A	A	I	D	D	A	N	L	T	P	D	I	R	A	D	I	H	A	E	L	V	R	L	S	F	M	P	T	R	S	E	.	.	.	.	.	.	.	.	.	.	.	.	.	S	E	R	Y	A	I	A	D	R	A	L	A	Q	Y	A	A	L	E	I	L	W	H
Query Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																															.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		G	R	L	A	S	T	L	V	H	L	G	E	Y	Q	A	A	V	D	G	A	R	K	A	N	S	T	R	T	W	K	E	V	C	F	A	C	V	D	G	K	E	F	R	L	A	Q	M	C	G	L	H	I	V	V	H	A	D	E	L	E	E	L	I	N	Y	Y	Q	D	R	G	Y	F	E	E	L	I	T	M	L	E
Template Known Secondary structure											T	T												T	T	S	S		T											T	T								T		S												S	S	S					T	T										T
Template Predicted Secondary structure
Template SS confidence
		1225	.	.	.	.	1230	.	.	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.	.	.	.	.	.	.	.	1270	.	.	.	.	.	.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.	.	.	.	.	.	.	1300	.	.	.	.
		269	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290			.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.					.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.
Predicted Secondary structure																								.	.																			.	.	.	.
Query SS confidence																								.	.																			.	.	.	.
Query Sequence		D	N	P	D	R	T	A	Q	Y	Q	R	I	Q	V	D	H	L	G	A	L	L	T	.	.	R	D	R	Y	K	D	V	I	S	H	Y	Q	R	L	K	K	T	G	.	.	.	.	Q	I	I	P	P	W	G	Q	Y	W	V	A	S	A	Y	L	K	D	H	Q	P	K	K	A	Q	S	I	M	T	E	L	F	Y	H
Query Conservation																								.	.																			.	.	.	.
Alig confidence																								.	.																			.	.	.	.
Template Conservation
Template Sequence		A	A	L	G	L	E	R	A	H	M	G	M	F	T	E	L	A	I	L	Y	S	K	F	K	P	Q	K	M	R	E	H	L	E	L	F	W	S	R	V	N	I	P	K	V	L	R	A	A	E	Q	A	H	L	W	A	E	L	V	F	L	Y	D	K	Y	E	E	Y	D	N	A	I	I	T	M	M	N	H	P	T	D
Template Known Secondary structure		T	T	T	T	S	S	S																		G	G	G					T	T	S	S	G	G	G	S		S											T												T	T												S
Template Predicted Secondary structure
Template SS confidence
		1305	.	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.	1370	.	.	.	.	.	.	.	.	.	1380	.	.	.	.
		343	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	E	T	I	A	P	D	L	S	D	E	E	L	A	D	L	F	Y	S	H	L	E	S	E	N	Y	P	G	A	L	T	V	T	Q	H	T	I	N	T	S	P	P	F	L	R	L	M	G	T	P	T	S	I	P	N	D	T	W	L	Q	G	H	S	F	L	S	T	V	A	K	Y	S	N	D	L	P	Q	A	E	M
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.																																													.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.																																													.	.	.	.	.
Template Sequence		A	W	K	.	.	.	.	.	.	.	.	.	E	G	Q	F	K	D	I	I	T	K	V	A	N	V	E	L	Y	Y	R	A	I	Q	F	Y	L	E	F	K	P	L	L	L	N	D	L	L	M	V	L	S	P	R	L	D	.	.	.	.	.	H	T	R	A	V	N	Y	F	S	K	V	K	Q	L	P	L	V	K	P
Template Known Secondary structure					.	.	.	.	.	.	.	.	.	T	T										S	S	T													T		S	T	T								T	S	S	S			.	.	.	.	.											T	S		T	T	T	S
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.																																													.	.	.	.	.
Template SS confidence
		1385	.	.										.	.	1390	.	.	.	.	.	.	.	.	.	1400	.	.	.	.	.	.	.	.	.	1410	.	.	.	.	.	.	.	.	.	1420	.	.	.	.	.	.	.	.	.	1430	.						.	.	.	.	.	.	.	.	1440	.	.	.	.	.	.	.	.	.	1450
		423	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.											.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.	.
Query Sequence		T	A	R	E	L	A	Y	N	A	P	G	N	Q	G	L	R	I	D	Y	A	S	V	L	Q	A	R	G	W	P	R	A	A	E	N	E	L	K	K	A	E	V	I	E	P	.	.	.	.	.	.	.	.	.	.	R	N	I	N	L	E	V	E	Q	A	W	T	A	L	T	L	Q	E	W	Q	Q	A	A	V	L	T
Query Conservation																																														.	.	.	.	.	.	.	.	.	.
Alig confidence										.	.																																			.	.	.	.	.	.	.	.	.	.
Template Conservation										.	.
Template Sequence		Y	L	R	S	V	Q	N	H	.	.	N	N	K	S	V	N	E	S	L	N	N	L	F	I	T	E	E	D	Y	Q	A	L	R	T	S	I	D	A	Y	D	N	F	D	N	I	S	L	A	Q	R	L	E	K	H	E	L	I	E	F	R	R	I	A	A	Y	L	F	K	G	N	N	R	W	K	Q	S	V	E	L	C
Template Known Secondary structure							G	G	G	.	.																T	T															S											T		S	S												T	T	S	S
Template Predicted Secondary structure										.	.
Template SS confidence
		1451	.	.	.	.	.	.	.			.	1460	.	.	.	.	.	.	.	.	.	1470	.	.	.	.	.	.	.	.	.	1480	.	.	.	.	.	.	.	.	.	1490	.	.	.	.	.	.	.	.	.	1500	.	.	.	.	.	.	.	.	.	1510	.	.	.	.	.	.	.	.	.	1520	.	.	.	.	.	.	.	.
		493	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		K	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		1529	1530