Job Description P69434 Confidence 99.00% Date Thu Jan 5 12:11:38 GMT 2012 Rank 88 Aligned Residues 188 % Identity 9% Template c1ltxA_ PDB info PDB header:transferase/protein binding Chain: A: PDB Molecule:rab geranylgeranyltransferase alpha subunit; PDBTitle: structure of rab escort protein-1 in complex with rab2 geranylgeranyl transferase and isoprenoid Resolution 2.70 Å

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		315	.	.	.	.	320	.	.	.	.	.	.	.	.	.		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.											.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.
Predicted Secondary structure																	.																																							.	.	.	.	.	.	.	.	.	.
Query SS confidence																	.																																							.	.	.	.	.	.	.	.	.	.
Query Sequence		G	Q	Y	W	V	A	S	A	Y	L	K	D	H	Q	P	.	K	K	A	Q	S	I	M	T	E	L	F	Y	H	K	E	T	I	A	P	D	L	S	D	E	E	L	A	D	L	F	Y	S	H	L	E	S	E	N	.	.	.	.	.	.	.	.	.	.	Y	P	G	A	L	T	V	T	Q	H	T	I	N	T	S	P
Query Conservation																	.																																							.	.	.	.	.	.	.	.	.	.
Alig confidence																	.																.	.	.	.	.																			.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.	.	.	.	.
Template Sequence		S	A	T	Q	A	V	F	Q	K	R	Q	A	G	E	L	D	E	S	V	L	E	L	T	S	Q	I	L	G	A	N	P	.	.	.	.	.	D	F	A	T	L	W	N	C	R	R	E	V	L	Q	H	L	E	T	E	K	S	P	E	E	S	A	A	L	V	K	A	E	L	G	F	L	E	S	C	L	R	V	N	P
Template Known Secondary structure													S				S	S	T	T												T	.	.	.	.	.	T												G	G	G	S	S	S	S	S		T	T	T																				S
Template Predicted Secondary structure																																	.	.	.	.	.
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60						.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
		384	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.			.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450		.	.	.	.	.	.	.	.	.	460
Predicted Secondary structure																																			.	.																																			.
Query SS confidence																																			.	.																																			.
Query Sequence		P	F	L	R	L	M	G	T	P	T	S	I	P	N	D	T	W	L	Q	G	H	S	F	L	S	T	V	A	K	Y	S	N	D	.	.	L	P	Q	A	E	M	T	A	R	E	L	A	Y	N	A	P	G	N	Q	G	L	R	I	D	Y	A	S	V	L	Q	A	R	G	W	.	P	R	A	A	E	N	E	L	K	K
Query Conservation																																			.	.																																			.
Alig confidence				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.																																			.
Template Conservation				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	G	T	W	H	H	R	C	W	L	L	S	R	L	P	E	P	N	W	A	R	E	L	E	L	C	A	R	F	L	E	A	D	E	R	N	F	H	C	W	D	Y	R	R	F	V	A	A	Q	A	A	V	A	P	A	E	E	L	A	F	T	D	S
Template Known Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.															S	S		T																T	T															T	T
Template Predicted Secondary structure				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		105	.																.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.
		461	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.									.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.	.	.	.	.	.
Query Sequence		A	E	V	I	E	P	R	N	I	N	L	E	V	E	Q	A	W	T	A	L	T	L	.	.	.	.	.	.	.	.	Q	E	W	Q	Q	A	A	V	L	T	H	D	V	V	E	R	E	P	Q	D	P	G	V	V	R	L	K	R	A	V	D	V	H	N	L	A	E	L	R	I
Query Conservation																								.	.	.	.	.	.	.	.
Alig confidence																								.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	I	T	R	N	F	S	N	Y	S	S	W	H	Y	R	S	C	L	L	P	Q	L	H	P	Q	G	R	L	P	E	N	V	L	L	K	E	L	E	L	V	Q	N	A	F	F	T	D	P	N	D	Q	S	A	W	F	Y	H	R	W	L	L	G	R	A	E	P	V	L	C	C
Template Known Secondary structure							S	S												T	T	T	T					S	S														T						T	T											T	T
Template Predicted Secondary structure
Template SS confidence
		170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions