Job Description P0A9U3 Confidence 100.00% Date Thu Jan 5 11:11:24 GMT 2012 Rank 5 Aligned Residues 454 % Identity 20% Template c3bk7A_ PDB info PDB header:hydrolyase/translation Chain: A: PDB Molecule:abc transporter atp-binding protein; PDBTitle: structure of the complete abce1/rnaase-l inhibitor protein2 from pyrococcus abysii Resolution 2.80 Å

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		2	.	.	.	.	.									.	.	10	.	.		.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.						.
Query SS confidence								.	.	.	.	.	.	.	.						.
Query Sequence		L	V	S	S	N	V	.	.	.	.	.	.	.	.	T	M	Q	F	G	.	S	K	P	L	F	E	N	I	S	V	K	F	G	G	G	N	R	Y	G	L	I	G	A	N	G	S	G	K	S	T	F	M	K	I	L	G	G	D	L	E	P	T	L	G	N	V	S	L	D	P	N	E	R	I	G	K	L	R	Q	D
Query Conservation								.	.	.	.	.	.	.	.						.
Alig confidence								.	.	.	.	.	.	.	.						.											.																																											.	.	.	.	.	.	.
Template Conservation																																.																																											.	.	.	.	.	.	.
Template Sequence		I	S	I	V	N	L	P	E	Q	L	D	E	D	C	V	H	R	Y	G	V	N	A	F	V	L	Y	R	L	P	I	.	V	K	D	G	M	V	V	G	I	V	G	P	N	G	T	G	K	T	T	A	V	K	I	L	A	G	Q	L	I	P	N	L	C	E	D	N	D	S	W	D	N	V	.	.	.	.	.	.	.
Template Known Secondary structure									T	T	G	G	G	S						S	T	T										.			T	T	S								T	T	S	S									T	T	S	S				T	T	T	T								.	.	.	.	.	.	.
Template Predicted Secondary structure																																.																																											.	.	.	.	.	.	.
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.			120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150
Predicted Secondary structure																																																	.	.
Query SS confidence																																																	.	.
Query Sequence		Q	F	A	F	E	E	F	T	V	L	D	T	V	I	M	G	H	K	E	L	W	E	V	K	Q	E	R	D	R	I	Y	A	L	P	E	M	S	E	E	D	G	Y	K	V	A	D	L	.	.	E	V	K	Y	G	E	M	D	G	Y	S	A	E	A	R	A	G	E	L	L	L	G	V	G	I	P	V	E	Q	H	Y
Query Conservation																																																	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.																																					.	.																										.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.																																																																.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	I	R	A	F	R	G	N	E	L	Q	N	Y	F	E	R	L	K	N	G	E	I	R	P	V	V	K	P	Q	Y	V	D	L	L	P	K	A	V	K	G	K	V	R	E	L	L	K	K	V	D	E	V	G	K	F	E	E	V	V	K	E	L	E	L	.	E	N	V	L	D
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.				T	T	T	S	T											T	S								S		G	G	G	G	G	G	T			S	B								T			S	S									T	T		.	T	T	G	G	G
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.																																																																.
Template SS confidence
													142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.		.	.	.	.	.
		151	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200				.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure																																																				.	.	.
Query SS confidence																																																				.	.	.
Query Sequence		G	P	M	S	E	V	A	P	G	W	K	L	R	V	L	L	A	Q	A	L	F	A	D	P	D	I	L	L	L	D	E	P	T	N	N	L	D	I	D	T	I	R	W	L	E	Q	V	L	N	E	.	.	.	R	D	S	T	M	I	I	I	S	H	D	R	H	F	L	N	M	V	C	T	H	M	A	D	L	D	Y
Query Conservation																																																				.	.	.
Alig confidence																																																				.	.	.
Template Conservation
Template Sequence		R	E	L	H	Q	L	S	G	G	E	L	Q	R	V	A	I	A	A	A	L	L	R	K	A	H	F	Y	F	F	D	E	P	S	S	Y	L	D	I	R	Q	R	L	K	V	A	R	V	I	R	R	L	A	N	E	G	K	A	V	L	V	V	E	H	D	L	A	V	L	D	Y	L	S	D	V	I	H	V	V	Y	G
Template Known Secondary structure		S	B	G	G	G																	S			S							T	T	T	T																			T	T								S										S							S
Template Predicted Secondary structure
Template SS confidence
		210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	E	L	R	V	Y	P	G	N	Y	D	E	Y	M	T	A	A	T	Q	A	R	E	R	L	L	A	D	N	A	K	K	K	A	Q	I	A	E	L	Q	S	F	V	S	R	F	S	A	N	A	S	K	S	R	Q	A	T	S	R	A	R	Q	I	D	K	I	K	L	E	E	V	K	A	S	S	R	Q	N	P	F	I
Query Conservation
Alig confidence					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	P	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	Y	G	I	F	S	K	P	K	G	T	R	N	G	I	N	E	F	L	Q	G	Y	L	K	D	E	N	V	R	F	R	P	Y	E	I	R	F	T	K
Template Known Secondary structure			T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T																				T			T	T	T	T					S	S
Template Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		290	.	.																																							.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.
		308	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	F	E	Q	D	K	K	L	F	R	N	A	L	E	V	E	G	L	T	K	G	F	D	N	G	P	L	F	K	N	L	N	L	L	L	E	V	G	E	K	L	A	V	L	G	T	N	G	V	G	K	S	T	L	L	K	T	L	V	G	D	L	Q	P	D	S	G	T	V	K	W	S	E	N	A	R	I	G	Y	Y
Query Conservation
Alig confidence																												.																																																.	.
Template Conservation																												.																																																.	.
Template Sequence		L	S	E	R	V	D	V	E	R	E	T	L	V	E	Y	P	R	L	V	K	D	Y	G	S	F	K	.	L	E	V	E	P	G	E	I	R	K	G	E	V	I	G	I	V	G	P	N	G	I	G	K	T	T	F	V	K	M	L	A	G	V	E	E	P	T	E	G	K	V	E	W	D	L	T	.	.	V	A	Y	K
Template Known Secondary structure		S	T	T	S																			S	S			.										T	T									T	T	S	S										T	S	S			S	B	S								.	.
Template Predicted Secondary structure																												.																																																.	.
Template SS confidence
		332	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.		.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.			.	.	.	.
		388	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410		.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.
Predicted Secondary structure																									.
Query SS confidence																									.
Query Sequence		A	Q	D	H	E	Y	E	F	E	N	D	L	T	V	F	E	W	M	S	Q	W	K	Q	.	E	G	D	D	E	Q	A	V	R	S	I	L	G	R	L	L	F	S	Q	D	D	I	K	K	P	A	K	V	L	S	G	G	E	K	G	R	M	L	F	G	K	L	M	M	Q	K	P	N	I	L	I	M	D	E	P	T
Query Conservation																									.
Alig confidence						.	.																		.																			.
Template Conservation						.	.																																					.
Template Sequence		P	Q	Y	I	.	.	K	A	E	Y	E	G	T	V	Y	E	L	L	S	K	I	D	S	S	K	L	N	S	N	F	Y	K	T	E	L	L	K	P	L	G	I	I	.	D	L	Y	D	R	N	V	E	D	L	S	G	G	E	L	Q	R	V	A	I	A	A	T	L	L	R	D	A	D	I	Y	L	L	D	E	P	S
Template Known Secondary structure			S	S		.	.					S	S	B																						T					T		T	.	T	T	T	T	S	B	G	G	G																T	S			S							T	T
Template Predicted Secondary structure						.	.																																					.
Template SS confidence
		409	410	.	.			.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.		.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.
		467	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.					.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.			510	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																				.	.	.	.																										.	.
Query SS confidence																				.	.	.	.																										.	.
Query Sequence		N	H	L	D	M	E	S	I	E	S	L	N	M	A	L	E	L	Y	.	.	.	.	Q	G	T	L	I	F	V	S	H	D	R	E	F	V	S	S	L	A	T	R	I	L	E	I	T	.	.	P	E	R	V	I	D	F	S	G	N
Query Conservation																				.	.	.	.																										.	.
Alig confidence																				.	.	.	.																										.	.
Template Conservation
Template Sequence		A	Y	L	D	V	E	Q	R	L	A	V	S	R	A	I	R	H	L	M	E	K	N	E	K	T	A	L	V	V	E	H	D	V	L	M	I	D	Y	V	S	D	R	L	I	V	F	E	G	E	P	G	R	H	G	R	A	L	P	P
Template Known Secondary structure		T	T																				T	T								S										S									T	T	T
Template Predicted Secondary structure
Template SS confidence
		486	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.