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Job DescriptionP0A9U3
Confidence100.00%DateThu Jan 5 11:11:24 GMT 2012
Rank6Aligned Residues465
% Identity21%Templatec2ygrD_
PDB info PDB header:hydrolaseChain: D: PDB Molecule:uvrabc system protein a; PDBTitle: mycobacterium tuberculosis uvra
Resolution3.40 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   5....10.........20.........30.........40.... .....50.........60...
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Query Sequence  SNVTMQFGSKPLFENISVKFGGGNRYGLIGANGSGKSTFM. . . . . . . . . . . . . . . . . . . . . KILGGDLEPTLGNVSLDPN
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Template Sequence  DRLIVKGAREHNLRSVDLDLPRDALIVFTGLSGSGKSSLAFDTIFAEGQRRYVESLSAYARQFLGQMDKPDVDFIEGLSP
Template Known Secondary structure 

SSS

SSSS
STTSSTTTTTT
STTTS




SS


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   3......10.........20.........30.........40.........50.........60.........70.........80..
 
   64.....70.........80.........90.........100..
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Query Sequence  ERIGKLRQDQFAFEEFTVLDTVIMGHKELWEVKQERDRI. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
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Template Sequence  AVS. . IDQKSTNRNPRSTVGTITEVYDYLRLLYARAGTPHCPTCGERVARQTPQQIVDQVLAMPEGTRFLVLAPVVRTRK
Template Known Secondary structure  ..
S





TT
BTTSSB
B
TTT

B
B


SS

SS


SSSSB
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   83.. ....90.........100.........110.........120.........130.........140.........150.........160
 
  
Predicted Secondary structure  ................................................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ................................................................................
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Template Sequence  GEFADLFDKLNAQGYSRVRVDGVVHPLTDPPRARRQEKHDIEVVVDKRRLTDSVETALNLADGIVVLEFVDHRFSEKLAC
Template Known Secondary structure  S
TTS

S
BSSS
B
TTS




TTS
B




SSS







TTBB
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   161........170.........180.........190.........200.........210.........220.........230.........240
 
  
Predicted Secondary structure  ................................................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ................................................................................
Template Conservation                 

 

  
 
  
 
 
     
    
     
   

                          
Template Sequence  PNGHALAVDDLEPRSFSFNSPYGACPDCSGLGIRKEVDPELVVPDPDRTLAQGAVAPWSNGHTAEYFTRMMAGLGEALGF
Template Known Secondary structure  TT



S
S


GGGG
TTSTTTBBTTBSSS


SS

SSSSS
S
STT
SSTTS
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   258.260.........270.........280.........290.........300.........310.........320.........330.......
 
  
Predicted Secondary structure  ................................................................................
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Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation  ................................................................................
Template Conservation      
       

 
                          
  
               
        
  
 
 

 
Template Sequence  DVDTPPAKARKAILEGADEQVHVRYRNRYGRTRSYYADFEGVLAFLQRKMSQTESEQMKERYEGFMRDVPCPVCAGTRLK
Template Known Secondary structure 
SS


T


S





SSS









S
TTTT
TTTTTS
B
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   338.340.........350.........360.........370.........380.........390.........400.........410.......
 
   103......110.........120.........130..... ....140.........150.........160......
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Query Sequence  . . . . . . . . . . . . . YALPEMSEEDGYKVADLEVKYGEMDGYSAEARA. . . GELLLGVGIPVEQHYGPMSEVAPGWKLRVLL
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Template Sequence  PEILAVTLKSIAEVCELSIADCADFLNALTLGPREQAIAGQVLKEIRSRLGFLLDVGLEYLSLSRAAATLSGGEAQRIRL
Template Known Secondary structure  T
B

GGG


TT

TTSTT
TTS
TTSBGGG

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   422.......430.........440.........450.........460.........470.........480.........490.........500.
 
   167..170..... ....180.........190.........200 .........210.........220..... ....230.....
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Query Sequence  AQALFADPD. . ILLLDEPTNNLDIDTIRWLEQVLNE. . . RDSTMIIISHDRHFLNMVCTHMADL. . . . . . DYGELRVYPG
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Template Sequence  ATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIE. HADWIVDIGPGAGEHGGRI. VHSG
Template Known Secondary structure  TT


S

TTTT


B

.T
SSSSSGGG

S.
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   512.......520.........530.........540.........550.........560...... ...570.........580..... ....
 
   236...240.........250.........260.........270.........280.........290.........300.........310.....
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Query Sequence  NYDEYMTAATQARERLLADNAKKKAQIAELQSFVSRFSANASKSRQATSRARQIDKIKLEEVKASSRQNPFIRFEQDKKL
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Template Conservation                  
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Template Sequence  PYDELLRNKDSITGAYL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . SGRESIEIPAIRRSVD
Template Known Secondary structure 

SS
...............................................TS





SS




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   590.........600...... ...610.........620..
 
   316...320.........330.........340.........350.........360... ......370.........380. ..
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Query Sequence  FRNALEVEGLTKGFDNGPLFKNLNLLLEVGEKLAVLGTNGVGKSTLLK. . TLVGDLQPDSGTVKWSEN. . . . . . . . . . AR
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Template Sequence  PRRQLTVVGAR. . . . . EHNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDK
Template Known Secondary structure  TTS
.....STT

SSSSSTTSSTTS






SS


GGG


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   623......630... ......640.........650.........660.........670.........680.........690.......
 
   384.....390.
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Query Sequence  IGYYAQDH. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation 
    
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Template Sequence  LVRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCE
Template Known Secondary structure 

S
S
SSTT
STTSTTT

GGGS
TTSTTTB
SSSTTSS

SSS


T
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   698.700.........710.........720.........730.........740.........750.........760.........770.......
 
   392.......400.........410.........420.........430.........440.........450..
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Query Sequence  . . . . . . . . . . . . . . . . . . . EYEFENDLTVFEWMSQWKQEGDDEQAVRSILGRLLFSQDDIKKPAKVLSGGEKGRMLFGKL
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Template Sequence  VCQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEPI. AGVHRYLRTLVDVGLGYVRLGQPAPTLSGGEAQRVKLASE
Template Known Secondary structure  TTTS
SB
T

BTTB
TSBSTT
.SS
SSSBTT

GGGS
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   778.780.........790.........800.........810...... ...820.........830.........840.........850......
 
   453... ...460.........470.........480.... .....490.........500........ .510.........520
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Query Sequence  MMQK. . . PNILIMDEPTNHLDMESIESLNMALELY. . . QGTLIFVSHDREFVSSLATRILEI. . . . . . TPERVIDFSGNY
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Template Sequence  LQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKT. SDWIIDLGPEGGAGGGTVVA. QGTP
Template Known Secondary structure  SSS


SS
SSSTT

T



.
SSSSTTS
S.
S
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   857..860.........870.........880.........890.........900.........910 .........920.........930 ....
 
   521.......
Predicted Secondary structure 

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Query Sequence  EDYLRSKG
Query Conservation          
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Template Conservation   

     
Template Sequence  EDVAAVPA
Template Known Secondary structure  TT
SS
Template Predicted Secondary structure 


Template SS confidence 







   935....940..
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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