Job Description P0A9U3 Confidence 100.00% Date Thu Jan 5 11:11:24 GMT 2012 Rank 19 Aligned Residues 327 % Identity 17% Template c1q1bD_ PDB info PDB header:transport protein Chain: D: PDB Molecule:maltose/maltodextrin transport atp-binding protein malk; PDBTitle: crystal structure of e. coli malk in the nucleotide-free form Resolution 2.80 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.										.	.	.	.	.	70	.	.
Predicted Secondary structure																																																																	.	.	.	.	.	.	.	.	.
Query SS confidence																																																																	.	.	.	.	.	.	.	.	.
Query Sequence		L	V	S	S	N	V	T	M	Q	F	G	S	K	P	L	F	E	N	I	S	V	K	F	G	G	G	N	R	Y	G	L	I	G	A	N	G	S	G	K	S	T	F	M	K	I	L	G	G	D	L	E	P	T	L	G	N	V	S	L	D	P	N	E	.	.	.	.	.	.	.	.	.	R	I	G	K	L	R	Q	D
Query Conservation																																																																	.	.	.	.	.	.	.	.	.
Alig confidence																																																																	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	Q	L	Q	N	V	T	K	A	W	G	E	V	V	V	S	K	D	I	N	L	D	I	H	E	G	E	F	V	V	F	V	G	P	S	G	C	G	K	S	T	L	L	R	M	I	A	G	L	E	T	I	T	S	G	D	L	F	I	G	E	K	R	M	N	D	T	P	P	A	E	R	G	V	G	M	V	F	Q	S
Template Known Secondary structure												T	T													T	T								S	G	G	G	S								T	T	T	S	S				S	S					T	T				T	T			S	S	T	T					B		S
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		73	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	F	A	F	E	E	F	T	V	L	D	T	V	I	M	G	H	K	E	L	W	E	V	K	Q	E	R	D	R	I	Y	A	L	P	E	M	S	E	E	D	G	Y	K	V	A	D	L	E	V	K	Y	G	E	M	D	G	Y	S	A	E	A	R	A	G	E	L	L	L	G	V	G	I	P	V	E	Q	H	Y	G	P
Query Conservation
Alig confidence																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Template Conservation																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Template Sequence		Y	A	L	Y	P	H	L	S	V	A	E	N	M	S	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	L	K	L	A	G	A	K	K	E	V	I	N	Q	R	V	N	Q	V	A	E	V	L	Q	L	.	A	H	L	L	D	R	K
Template Known Secondary structure						T	T	S						T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	T	T	S	S	S	S	T	T	T	T	T	T	T					T	T	G	G	G	T		.	T	T		S	S
Template Predicted Secondary structure																	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																										.
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.																																	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.		.	.	.	.	.	.	130
		153	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.					.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																.	.	.	.
Query SS confidence																																																.	.	.	.
Query Sequence		M	S	E	V	A	P	G	W	K	L	R	V	L	L	A	Q	A	L	F	A	D	P	D	I	L	L	L	D	E	P	T	N	N	L	D	I	D	T	I	R	W	L	E	Q	V	L	.	.	.	.	N	E	R	D	S	T	M	I	I	I	S	H	D	R	H	F	L	N	M	V	C	T	H	M	A	D	L	D	Y	G
Query Conservation																																																.	.	.	.
Alig confidence																																																.	.	.	.
Template Conservation
Template Sequence		P	K	A	L	S	G	G	Q	R	Q	R	V	A	I	G	R	T	L	V	A	E	P	S	V	F	L	L	D	E	P	L	S	N	L	D	A	A	L	R	V	Q	M	R	I	E	I	S	R	L	H	K	R	L	G	R	T	M	I	Y	V	T	H	D	Q	V	E	A	M	T	L	A	D	K	I	V	V	L	D	A	G
Template Known Secondary structure				G	G	G	T	T	T	S	S	S	S	T	T					T	T			S				B	S	S	T	T	T	T			T	T	T															T	T								S										S							T	T
Template Predicted Secondary structure
Template SS confidence
		131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
		229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	R	V	Y	P	G	N	Y	D	E	Y	M	T	A	A	T	Q	A	R	E	R	L	L	A	D	N	A	K	K	K	A	Q	I	A	E	L	Q	S	F	V	S	R	F	S	A	N	A	S	K	S	R	Q	A	T	S	R	A	R	Q	I	D	K	I	K	L	E	E	V	K	A	S	S	R	Q	N	P	F	I	R
Query Conservation
Alig confidence				.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation				.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		R	V	.	A	Q	V	G	K	P	L	E	L	Y	H	Y	P	A	D	R	F	V	A	G	F	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	G	S	P	K	M	N	F	L	P	V	K	V	T	A	T	A	I	D	Q	V	Q	V	E	L	P	M	P	N	R	Q	Q	V	W	L	P	V	E	S	R
Template Known Secondary structure				.												S		S	B							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S	S	S														T	T							S	S	T	T								B			T
Template Predicted Secondary structure				.																						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		211	.		.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.																	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.
		309	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.		.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.
Predicted Secondary structure																															.
Query SS confidence																															.
Query Sequence		F	E	Q	D	K	K	L	F	R	N	A	L	E	V	E	G	L	T	K	G	F	D	N	G	P	L	F	K	N	.	L	N	L	L	L	E	V	G	E	K	L	A	V	L	G	T	N	G	V	G	K	S	T	L	L	K	T	L	V	G	D	L	Q	P	D	S	G	T	V	K	W
Query Conservation																															.
Alig confidence																															.
Template Conservation
Template Sequence		D	V	Q	V	G	A	N	M	S	L	G	I	R	P	E	H	L	L	P	S	D	I	A	D	V	I	L	E	G	E	V	Q	V	V	E	Q	L	G	N	E	T	Q	I	H	I	Q	I	P	S	I	R	Q	N	L	V	Y	R	Q	N	D	V	V	L	V	E	E	G	A	T	F	A
Template Known Secondary structure		T			T	T									G	G	G		B		S		S		S	S													S	S									T	T		S	S								S						T	T
Template Predicted Secondary structure
Template SS confidence
		274	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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