Job Description P37007 Confidence 99.56% Date Thu Jan 5 11:54:19 GMT 2012 Rank 12 Aligned Residues 147 % Identity 23% Template c3kksB_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:integrase; PDBTitle: crystal structure of catalytic core domain of biv integrase in crystal2 form ii Resolution 2.20 Å

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		143	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	L	W	Q	M	D	F	K	G	H	F	P	F	G	G	G	R	C	H	P	L	T	L	L	D	D	H	S	R	F	S	L	C	L	A	H	C	T	D	E	R	R	E	T	V	Q	Q	Q	L	V	S	V	F	E	R	Y	G	L	P	D	R	M	T	M	D	N	G	S	P	W	G	D	T	T	G	T	W	T	A	L
Query Conservation
Alig confidence												.	.	.	.	.																						.																								.												.	.	.	.	.
Template Conservation												.	.	.	.	.																						.																								.												.	.	.	.	.
Template Sequence		H	L	W	Q	M	D	N	T	H	W	.	.	.	.	.	N	K	T	I	I	W	V	A	V	E	T	N	S	G	L	V	E	A	Q	V	I	.	P	E	E	T	A	L	Q	V	A	L	C	I	L	Q	L	I	Q	R	Y	T	V	L	H	.	L	H	S	D	N	G	P	C	F	T	A	.	.	.	.	.	H	R	I
Template Known Secondary structure												.	.	.	.	.	T	T									T	T	T	T								.	S	S	S																S			S		.					S						S	.	.	.	.	.
Template Predicted Secondary structure												.	.	.	.	.																						.																								.												.	.	.	.	.
Template SS confidence
		59	60	.	.	.	.	.	.	.	.						.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.		90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.		.	.	.	.	.	.	.	120	.	.	.						.	.	.
		223	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	L	W	L	M	R	L	G	I	R	V	G	H	S	R	P	Y	H	P	Q	T	Q	G	K	L	E	R	F	H	R	S	L	K	A	E	V	L	Q	G	K	W	F	A	D	S	G	E	L	Q	R	A	F	D	H	W	R	T	V	Y	N	L	E	R	P	H	E	A	L	D	M	A	V	P	G	S	R	Y	Q	P	S
Query Conservation
Alig confidence																																														.	.															.	.
Template Conservation																																														.	.															.	.
Template Sequence		E	N	L	C	K	Y	L	G	I	T	K	T	T	G	I	P	Y	N	P	Q	S	Q	G	V	V	E	R	A	H	R	D	L	K	D	R	L	A	A	Y	Q	G	D	C	E	.	.	T	V	E	A	A	L	S	L	A	L	V	S	L	N	.	.	K	K	R	G	G	I	G	G	H	T	P	Y	E	I	Y	L	E	S
Template Known Secondary structure								T	T						S	S		S																							G	G	G		S	.	.	S														.	.		S				G	G	G
Template Predicted Secondary structure																																														.	.															.	.
Template SS confidence
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170			.	.	.	.	.	.	.	.	.	180	.	.	.	.			.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.
		303	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	H	T
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		203	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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