Job Description P37007 Confidence 99.58% Date Thu Jan 5 11:54:19 GMT 2012 Rank 11 Aligned Residues 264 % Identity 15% Template c3hosA_ PDB info PDB header:transferase, dna binding protein/dna Chain: A: PDB Molecule:transposable element mariner, complete cds; PDBTitle: crystal structure of the mariner mos1 paired end complex with mg Resolution 3.50 Å

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		14	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.								.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure																										.	.	.	.	.	.	.																																													.	.	.	.	.
Query SS confidence																										.	.	.	.	.	.	.																																													.	.	.	.	.
Query Sequence		S	L	R	T	E	F	V	L	F	A	S	Q	D	G	A	N	I	R	S	L	C	R	R	F	.	.	.	.	.	.	.	G	I	S	P	A	T	G	Y	K	W	L	Q	R	W	A	Q	E	G	A	A	G	L	Q	D	R	P	R	I	P	H	H	S	P	N	R	S	S	D	D	I	T	A	L	L	.	.	.	.	.
Query Conservation																										.	.	.	.	.	.	.																																													.	.	.	.	.
Alig confidence																										.	.	.	.	.	.	.																					.	.																							.	.	.	.	.
Template Conservation																																																					.	.
Template Sequence		E	Q	T	R	T	V	L	I	F	C	F	H	L	K	K	T	A	A	E	S	H	R	M	L	V	E	A	F	G	E	Q	V	P	T	V	K	T	C	E	R	W	F	Q	R	F	K	S	G	D	F	D	.	.	V	D	D	K	E	H	G	K	P	P	K	R	Y	E	D	A	E	L	Q	A	L	L	D	E	D	D	A
Template Known Secondary structure														T	T														T		S		S															T	T				.	.	S	S										S	S												S	S
Template Predicted Secondary structure																																																					.	.
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.			60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.
				82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.		.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure		.	.																																																				.																										.
Query SS confidence		.	.																																																				.																										.
Query Sequence		.	.	R	M	A	H	D	R	H	E	R	W	G	A	R	K	I	K	R	W	L	E	D	Q	G	H	T	M	P	A	F	S	T	V	H	N	L	M	A	R	H	G	L	L	P	G	A	S	P	G	I	P	A	.	T	G	R	F	E	H	D	A	P	N	R	L	W	Q	M	D	F	K	G	H	F	P	F	G	G	.
Query Conservation		.	.																																																				.																										.
Alig confidence		.	.																																																				.																										.
Template Conservation
Template Sequence		Q	T	Q	K	Q	L	A	E	Q	L	E	V	S	Q	Q	A	V	S	N	R	L	R	E	M	G	K	I	Q	K	V	G	R	W	V	P	H	E	L	N	E	R	Q	M	E	R	R	K	N	T	C	E	I	L	L	S	R	Y	K	R	K	S	F	L	H	R	I	V	T	G	D	E	K	W	I	F	F	V	N	P	K
Template Known Secondary structure									T	T	T	T	S												T	T										S																											G	G	G	G											S	B
Template Predicted Secondary structure
Template SS confidence
		87	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.
																							158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180			.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	R	C	H	P	L	T	L	L	D	D	H	S	R	F	S	L	C	L	A	H	C	T	.	.	D	E	R	R	E	T	V	Q	Q	Q	L	V	S	V	F	E	R	Y	G	L	P	D	R	M	T	M	D	N	G	S	P	W	G	D
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																								.	.
Template Conservation
Template Sequence		R	K	K	S	Y	V	D	P	G	Q	P	A	T	S	T	A	R	P	N	R	F	G	K	K	T	M	L	C	V	W	W	D	Q	S	G	V	I	Y	Y	E	L	L	K	P	G	E	T	V	N	A	A	R	Y	Q	Q	Q	L	I	N	L	N	R	A	L	Q	R	K	R	P	E	Y	R	V	I	F	L	H	D	N	A
Template Known Secondary structure								S	S	S											S	S												T	T										S	S																								S
Template Predicted Secondary structure
Template SS confidence
		167	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
		215	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.		.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure																																				.
Query SS confidence																																				.
Query Sequence		T	T	G	T	W	T	A	L	E	L	W	L	M	R	L	G	I	R	V	G	H	S	R	P	Y	H	P	Q	T	Q	G	K	L	E	.	R	F	H	R	S	L	K	A	E	V	L	Q	G	K	W	F	A	D	S	G	E	L	Q	R	A	F	D	H	W	R	T	V	Y
Query Conservation																																				.
Alig confidence																																	.			.							.
Template Conservation																																	.										.
Template Sequence		P	S	H	T	A	R	A	V	R	D	T	L	E	T	L	N	W	E	V	L	P	H	A	A	Y	S	P	D	L	A	P	.	S	D	Y	H	L	F	A	S	M	.	G	H	A	L	A	E	Q	R	F	D	S	Y	E	S	V	K	K	W	L	D	E	W	F	A	A	K
Template Known Secondary structure		S	T	T	S										T	T									T	T		T	T	S			.				T						.				T	T	T		B		S	S															S
Template Predicted Secondary structure																																	.										.
Template SS confidence
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.		.	.	.	.	.	.	.	290	.		.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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