Job Description P37007 Confidence 99.78% Date Thu Jan 5 11:54:19 GMT 2012 Rank 3 Aligned Residues 147 % Identity 18% Template c3f9kV_ PDB info PDB header:viral protein, recombination Chain: V: PDB Molecule:integrase; PDBTitle: two domain fragment of hiv-2 integrase in complex with ledgf ibd Resolution 3.20 Å

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		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	D	A	P	N	R	L	W	Q	M	D	F	K	G	H	F	P	F	G	G	G	R	C	H	P	L	T	L	L	D	D	H	S	R	F	S	L	C	L	A	H	C	T	D	E	R	R	E	T	V	Q	Q	Q	L	V	S	V	F	E	R	Y	G	L	P	D	R	M	T	M	D	N	G	S	P	W	G	D	T	T	G
Query Conservation
Alig confidence																	.	.	.	.	.																							.																							.	.	.	.	.	.
Template Conservation																	.	.	.	.	.																							.																							.	.	.	.	.	.
Template Sequence		V	N	A	E	L	G	T	W	Q	M	D	C	T	H	L	.	.	.	.	.	E	G	K	I	I	I	V	A	V	H	V	A	S	G	F	I	E	A	E	V	I	P	.	Q	E	S	G	R	Q	T	A	L	F	L	L	K	L	A	S	R	W	P	I	T	H	.	.	.	.	.	.	L	H	T	D	N	G	A	N	F
Template Known Secondary structure						T	T										.	.	.	.	.	T	T									T	T	T	T								S	.	S															T	T	S					.	.	.	.	.	.							T	T	T
Template Predicted Secondary structure																	.	.	.	.	.																							.																							.	.	.	.	.	.
Template SS confidence
		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.						.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90		.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.							.	.	.	.	.	.	.	120	.
		218	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	W	T	A	L	E	L	W	L	M	R	L	G	I	R	V	G	H	S	R	P	Y	H	P	Q	T	Q	G	K	L	E	R	F	H	R	S	L	K	A	E	V	L	Q	G	K	W	F	A	D	S	G	E	L	Q	R	A	F	D	H	W	R	T	V	Y	N	L	E	R	P	H	E	A	L	D	M	A	V	P	G	S
Query Conservation
Alig confidence																																																				.	.															.
Template Conservation																																																				.	.															.
Template Sequence		T	S	Q	E	V	K	M	V	A	W	W	I	G	I	E	Q	S	F	G	V	P	Y	N	P	Q	S	Q	G	V	V	E	A	M	N	H	H	L	K	N	Q	I	S	R	I	R	E	Q	A	N	T	.	.	I	E	T	I	V	L	M	A	V	H	C	M	N	F	.	K	R	R	G	G	I	G	D	M	T	P	S	E
Template Known Secondary structure		T												T						S	S		S	S	S	T	T	T	T																	G	G	G		S		.	.															.	T			B	T	T	T	T	B
Template Predicted Secondary structure																																																				.	.															.
Template SS confidence
		122	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.			.	.	.	.	.	.	.	.	180	.	.	.	.	.		.	.	.	.	190	.	.	.	.	.	.	.	.
		298	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		199	200

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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