Job Description P37007 Confidence 99.19% Date Thu Jan 5 11:54:19 GMT 2012 Rank 20 Aligned Residues 141 % Identity 18% Template c3dlrA_ PDB info PDB header:transferase Chain: A: PDB Molecule:integrase; PDBTitle: crystal structure of the catalytic core domain from pfv2 integrase Resolution 2.20 Å

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		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	P	N	R	L	W	Q	M	D	F	K	G	H	F	P	F	G	G	G	R	C	H	P	L	T	L	L	D	D	H	S	R	F	S	L	C	L	A	H	C	T	D	E	R	R	E	T	V	Q	Q	Q	L	V	S	V	F	E	R	Y	G	L	P	D	R	M	T	M	D	N	G	S	P	W	G	D	T	T	G	T
Query Conservation
Alig confidence																																																						.	.																							.	.	.	.
Template Conservation																																																						.	.																							.	.	.	.
Template Sequence		Q	K	P	F	D	K	F	F	I	D	Y	I	G	P	L	P	P	S	Q	G	Y	L	Y	V	L	V	V	V	D	G	X	T	G	F	T	W	L	Y	P	T	K	A	P	S	T	S	A	T	V	K	S	L	.	.	N	V	L	T	S	I	A	I	P	K	V	I	H	S	D	Q	G	A	A	F	T	S	.	.	.	.
Template Known Secondary structure				T	T	S											S		B	T	T	B									T	T	T									S	S	S										.	.				T	T	T				S						S						S	.	.	.	.
Template Predicted Secondary structure																																																						.	.																							.	.	.	.
Template SS confidence
		119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170			.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	T	A	L	E	L	W	L	M	R	L	G	I	R	V	G	H	S	R	P	Y	H	P	Q	T	Q	G	K	L	E	R	F	H	R	S	L	K	A	E	V	L	Q	G	K	W	F	A	D	S	G	E	L	Q	R	A	F	D	H	W	R	T	V	Y	N	L	E	R	P	H	E	A	L	D	M	A	V	P	G	S	R
Query Conservation
Alig confidence		.															.	.	.	.	.	.	.	.	.	.																.	.																																.
Template Conservation		.															.	.	.	.	.	.	.	.	.	.																.	.																																.
Template Sequence		.	S	T	F	A	E	W	A	K	E	R	G	I	H	L	.	.	.	.	.	.	.	.	.	.	E	F	S	V	E	R	K	N	S	D	I	K	R	L	L	.	.	T	K	L	L	V	G	R	P	T	K	W	Y	D	L	L	P	V	V	Q	L	A	L	N	N	T	Y	S	P	V	L	K	.	Y	T	P	H	Q	L
Template Known Secondary structure		.											T				.	.	.	.	.	.	.	.	.	.																.	.					T	T		G	G	G														T	S			S	S		S	.	S
Template Predicted Secondary structure		.															.	.	.	.	.	.	.	.	.	.																.	.																																.
Template SS confidence
			193	.	.	.	.	.	.	200	.	.	.	.	.	.											.	.	.	210	.	.	.	.	.	.	.	.	.	220	.			.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.		.	.	.	.	.	.
		299
Predicted Secondary structure
Query SS confidence
Query Sequence		Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		269

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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