Job Description P37007 Confidence 98.93% Date Thu Jan 5 11:54:19 GMT 2012 Rank 21 Aligned Residues 126 % Identity 16% Template c2k27A_ PDB info PDB header:transcription regulator Chain: A: PDB Molecule:paired box protein pax-8; PDBTitle: solution structure of human pax8 paired box domain Resolution UNK

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	M	S	L	R	T	E	F	V	L	F	A	S	Q	D	G	A	N	I	R	S	L	C	R	R	F	G	I	S	P	A	T	G	Y	K	W	L	Q	R	W	A	Q	E	G	A	A	G	L	Q	D	R	P	R	I	P	H	H	S	P	N	R	S	S	D	D	I	T	A	L	L	R	M	A	H	D	R	H	E	R	W
Query Conservation
Alig confidence											.																																				.	.	.
Template Conservation											.																																				.	.	.
Template Sequence		P	E	V	V	R	Q	R	I	V	.	D	L	A	H	Q	G	V	R	P	C	D	I	S	R	Q	L	R	V	S	H	G	C	V	S	K	I	L	G	R	Y	Y	E	T	G	S	.	.	.	I	R	P	G	V	I	G	G	S	K	P	K	V	A	T	P	K	V	V	E	K	I	G	D	Y	K	R	Q	N	P	T	M
Template Known Secondary structure											.						T											T			S										S	S	T	T	S		.	.	.																T	T													S	S	S
Template Predicted Secondary structure											.																																				.	.	.
Template SS confidence
		27	.	.	30	.	.	.	.	.		.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70				.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
		92	.	.	.	.	.	.	.	100	.	.	.	.	.					.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure																.	.	.	.
Query SS confidence																.	.	.	.
Query Sequence		G	A	R	K	I	K	R	W	L	E	D	Q	G	H	.	.	.	.	T	M	P	A	F	S	T	V	H	N	L	M	A	R	H	G	L	L	P	G	A	S	P	G	I	P	A	T	G	R	F	E	H	D	A	P
Query Conservation																.	.	.	.
Alig confidence																.	.	.	.
Template Conservation
Template Sequence		F	A	W	E	I	R	D	R	L	L	A	E	G	V	C	D	N	D	T	V	P	S	V	S	S	I	N	R	I	I	R	T	K	V	Q	Q	P	F	N	L	P	M	D	S	G	A	P	G	G	G	S	H	H	H
Template Known Secondary structure														T		S		T	T	T	S														S				S
Template Predicted Secondary structure
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions