Job Description P37007 Confidence 99.61% Date Thu Jan 5 11:54:19 GMT 2012 Rank 9 Aligned Residues 152 % Identity 18% Template c1ex4A_ PDB info PDB header:viral protein Chain: A: PDB Molecule:integrase; PDBTitle: hiv-1 integrase catalytic core and c-terminal domain Resolution 2.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	A	P	N	R	L	W	Q	M	D	F	K	G	H	F	P	F	G	G	G	R	C	H	P	L	T	L	L	D	D	H	S	R	F	S	L	C	L	A	H	C	T	D	E	R	R	E	T	V	Q	Q	Q	L	V	S	V	F	E	R	Y	G	L	P	D	R	M	T	M	D	N	G	S	P	W	G	D	T	T	G	T
Query Conservation
Alig confidence						.										.	.	.	.	.																									.																		.															.	.	.	.
Template Conservation						.										.	.	.	.	.																									.																		.															.	.	.	.
Template Sequence		S	S	P	G	.	I	W	Q	L	D	C	T	H	L	.	.	.	.	.	E	G	K	V	I	L	V	A	V	H	V	A	S	G	Y	I	E	A	E	V	I	P	A	E	.	T	G	Q	E	T	A	Y	F	L	L	K	L	A	G	R	W	P	.	V	K	T	I	H	T	D	N	G	S	N	F	T	G	.	.	.	.
Template Known Secondary structure			G	G	G	.										.	.	.	.	.	T	T									T	T	T									S	S	S	.	S	T	T													S		.															.	.	.	.
Template Predicted Secondary structure						.										.	.	.	.	.																									.																		.															.	.	.	.
Template SS confidence
		56	.	.	.		60	.	.	.	.	.	.	.	.						.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.		.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.		110	.	.	.	.	.	.	.	.	.	120	.	.	.
		219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	T	A	L	E	L	W	L	M	R	L	G	I	R	V	G	H	S	R	P	Y	H	P	Q	T	Q	G	K	L	E	R	F	H	R	S	L	K	A	E	V	L	Q	G	K	W	F	A	D	S	G	E	L	Q	R	A	F	D	H	W	R	T	V	Y	N	L	E	R	P	H	E	A	L	D	M	A	V	P	G	S	R
Query Conservation
Alig confidence		.															.	.	.																															.	.	.
Template Conservation		.															.	.	.																															.	.	.
Template Sequence		.	A	T	V	R	A	A	C	D	W	A	G	I	K	Q	.	.	.	E	D	G	I	P	Q	S	Q	G	V	V	E	S	M	N	K	E	L	K	K	I	I	G	Q	V	R	D	Q	A	E	.	.	.	H	L	K	T	A	V	Q	M	A	V	F	I	H	N	K	K	R	K	G	G	I	G	G	Y	S	A	G	E	R
Template Known Secondary structure		.								T	T	T	T				.	.	.							S	S																		G	G	G		S	.	.	.	S	S																S	S	S	S	S
Template Predicted Secondary structure		.															.	.	.																															.	.	.
Template SS confidence
			124	.	.	.	.	.	130	.	.	.	.	.	.	.				.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.				.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.
		299	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	Q	P	S	A	R	Q	Y	S	G	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	V	D	I	I	A	T	D	I	Q	T
Template Known Secondary structure											T	T
Template Predicted Secondary structure
Template SS confidence
		200	.	.	.	.	.	.	.	.	.	210

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions