Job Description P37007 Confidence 99.75% Date Thu Jan 5 11:54:19 GMT 2012 Rank 5 Aligned Residues 157 % Identity 21% Template c1c0mA_ PDB info PDB header:transferase Chain: A: PDB Molecule:protein (integrase); PDBTitle: crystal structure of rsv two-domain integrase Resolution 2.53 Å

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		136	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	E	H	D	A	P	N	R	L	W	Q	M	D	F	K	G	H	F	P	F	G	G	G	R	C	H	P	L	T	L	L	D	D	H	S	R	F	S	L	C	L	A	H	C	T	D	E	R	R	E	T	V	Q	Q	Q	L	V	S	V	F	E	R	Y	G	L	P	D	R	M	T	M	D	N	G	S	P	W	G	D	T
Query Conservation
Alig confidence																.																										.																																							.
Template Conservation																.																										.																																							.
Template Sequence		P	R	G	L	G	P	L	Q	I	W	Q	T	D	F	.	T	L	E	P	R	M	A	P	R	S	W	L	A	V	T	V	D	T	A	S	S	A	I	V	V	.	T	Q	H	G	R	V	T	S	V	A	V	Q	H	H	W	A	T	A	I	A	V	L	G	R	P	K	A	I	K	T	D	N	G	S	C	F	T	S	.
Template Known Secondary structure		S			S	S	T	T	S							.				G	G	G		S	S									T	T	T						.				S	S																					S						S						S	.
Template Predicted Secondary structure																.																										.																																							.
Template SS confidence
		52	.	.	.	.	.	.	.	60	.	.	.	.	.		.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90		.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.
		216	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.					.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.
Predicted Secondary structure																																																		.	.	.	.
Query SS confidence																																																		.	.	.	.
Query Sequence		T	G	T	W	T	A	L	E	L	W	L	M	R	L	G	I	R	V	G	H	S	R	P	Y	H	P	Q	T	Q	G	K	L	E	R	F	H	R	S	L	K	A	E	V	L	Q	G	K	W	.	.	.	.	F	A	D	S	G	E	L	Q	R	A	F	D	H	W	R	T	V	Y	N	L	E	R	P	H	E	A	L	D
Query Conservation																																																		.	.	.	.
Alig confidence		.	.	.	.																																													.	.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	K	S	T	R	E	W	L	A	R	W	G	I	A	H	T	T	G	I	P	G	N	S	Q	G	Q	A	M	V	E	R	A	N	R	L	L	K	D	R	I	R	V	L	A	E	G	D	G	F	M	K	R	I	P	T	S	K	Q	G	E	L	L	A	K	A	M	Y	A	L	N	H	K	E	R	G	E	N
Template Known Secondary structure		.	.	.	.											T								S	S	S	S	T	T	S																					T	T		S	S	S			G	G	G														S	S			S	S
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						129	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
		292	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	A	V	P	G	S	R	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	K	T	P	I	Q	K	H
Template Known Secondary structure		S	S
Template Predicted Secondary structure
Template SS confidence
		205	.	.	.	.	210	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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