Job Description P37007 Confidence 99.94% Date Thu Jan 5 11:54:19 GMT 2012 Rank 1 Aligned Residues 229 % Identity 17% Template c1bcoA_ PDB info PDB header:transposase Chain: A: PDB Molecule:bacteriophage mu transposase; PDBTitle: bacteriophage mu transposase core domain Resolution 2.40 Å

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		137	.	.	140	.	.	.	.	.	.	.	.	.	150	.							.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.			.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.																																																					.	.
Query SS confidence																	.	.	.	.	.	.																																																					.	.
Query Sequence		E	H	D	A	P	N	R	L	W	Q	M	D	F	K	G	.	.	.	.	.	.	H	F	P	F	G	G	G	R	C	H	P	L	T	L	L	D	D	H	S	R	F	S	L	C	L	A	H	C	T	D	E	R	R	E	T	V	Q	Q	Q	L	V	S	V	F	E	R	Y	G	L	P	D	R	.	.	M	T	M	D	N
Query Conservation																	.	.	.	.	.	.																																																					.	.
Alig confidence																	.	.	.	.	.	.																																																					.	.
Template Conservation
Template Sequence		E	H	L	D	A	M	Q	W	I	N	G	D	G	Y	L	H	N	V	F	V	R	W	F	N	G	D	V	I	R	P	K	T	W	F	W	Q	D	V	K	T	R	K	I	L	G	W	R	C	D	V	S	E	N	I	D	S	I	R	L	S	F	M	D	V	V	T	R	Y	G	I	P	E	D	F	H	I	T	I	D	N
Template Known Secondary structure						T	T	T										S	B					T	T	S													T	T	T										S	S																					S	S
Template Predicted Secondary structure
Template SS confidence
		258	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.
		209	210	.	.	.													.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.				.	.	.	250	.	.	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		G	S	P	W	G	.	.	.	.	.	.	.	.	.	.	.	.	D	T	T	G	T	W	T	A	L	E	L	W	L	M	R	L	G	I	R	V	G	H	S	R	P	Y	H	P	Q	T	Q	G	K	.	.	.	L	E	R	F	H	R	S	L	K	A	E	V	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation							.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.	.	.	.	.	.	.																																		.	.	.														.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	R	G	A	A	N	K	W	L	T	G	G	A	P	N	R	Y	R	F	K	V	K	E	D	D	P	K	G	L	F	L	L	M	G	A	K	M	H	W	T	S	V	V	A	G	K	G	W	G	Q	A	K	P	V	E	R	A	F	G	V	G	G	L	E	E	Y	V	D	K	H	P	A	L	A	G	A	Y	T	G	P
Template Known Secondary structure		T	T	S	T	T	T	T	T	T	S				T	T	T	T	B	S		B													T						S	S	S		T	T						S	S		S	S	G	G	G	S	G	G	G	G	G	G	T	T	T	T		G	G	G	T	T	T	B
Template Predicted Secondary structure
Template SS confidence
		338	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.
		260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.					.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.					.	.	.	.	.	320	.	.	.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.																															.	.	.	.															.	.	.
Query SS confidence																											.	.	.	.																															.	.	.	.															.	.	.
Query Sequence		Q	G	K	W	F	A	D	S	G	E	L	Q	R	A	F	D	H	W	R	T	V	Y	N	L	E	.	.	.	.	R	P	H	E	A	L	D	M	A	V	P	G	S	R	Y	Q	P	S	A	R	Q	Y	S	G	N	T	T	P	P	E	.	.	.	.	Y	D	E	G	V	M	V	R	K	V	D	I	S	G	.	.	.
Query Conservation																											.	.	.	.																															.	.	.	.															.	.	.
Alig confidence																											.	.	.	.								.																							.	.	.	.															.	.	.
Template Conservation																																						.
Template Sequence		Y	G	D	R	A	V	D	A	E	L	F	L	K	T	L	A	E	G	V	A	M	F	N	A	R	T	G	R	E	T	E	M	C	G	G	K	.	L	S	F	D	D	V	F	E	R	E	Y	A	R	T	I	V	R	K	P	T	E	E	Q	K	R	M	L	L	L	P	A	E	A	V	N	V	S	R	K	G	E	F	T
Template Known Secondary structure			T	T	T																										S	T	T	T	T	T	T	.												T	T	S													T	S			B							T	T	S
Template Predicted Secondary structure																																						.
Template SS confidence
		426	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.		.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.
							329	330	.	.	.	.	.	.	.	.	.	340	.			.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.		.	.	360	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.														.	.																	.
Query SS confidence		.	.	.	.	.														.	.																	.
Query Sequence		.	.	.	.	.	K	L	S	V	K	G	V	S	L	S	A	G	K	.	.	A	F	R	G	E	R	V	G	L	K	E	M	Q	E	D	G	.	S	Y	E	V	W	W	Y	S	T
Query Conservation		.	.	.	.	.														.	.																	.
Alig confidence		.	.	.	.	.														.	.																	.
Template Conservation
Template Sequence		L	K	V	G	G	S	L	K	G	A	K	N	V	Y	Y	N	M	A	L	M	N	A	G	V	K	K	V	V	V	R	F	D	P	Q	Q	L	H	S	T	V	Y	C	Y	T	L	D
Template Known Secondary structure						T	T	S										G	G	G	T	S	S	S		S								G	G	G	T	T	T							T	T
Template Predicted Secondary structure
Template SS confidence
		505	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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