Job Description P77279 Confidence 100.00% Date Thu Jan 5 12:27:10 GMT 2012 Rank 1 Aligned Residues 216 % Identity 30% Template c2yyzA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:sugar abc transporter, atp-binding protein; PDBTitle: crystal structure of sugar abc transporter, atp-binding protein Resolution 2.11 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	L	L	Q	L	Q	N	V	G	Y	L	A	G	D	A	K	I	L	N	N	I	N	F	S	L	R	A	G	E	F	K	L	I	T	G	P	S	G	C	G	K	S	T	L	L	K	I	V	A	S	L	I	S	P	T	S	G	T	L	L	F	E	G	E	D	V	S	T	L	K	P	E	I	Y	R	Q	Q	V	S	Y
Query Conservation
Alig confidence																																																																										.	.
Template Conservation																																																																										.	.
Template Sequence		P	S	I	R	V	V	N	L	K	K	Y	F	G	K	V	K	A	V	D	G	V	S	F	E	V	K	D	G	E	F	V	A	L	L	G	P	S	G	C	G	K	T	T	T	L	L	M	L	A	G	I	Y	K	P	T	S	G	E	I	Y	F	D	D	V	L	V	N	D	I	P	P	K	.	.	Y	R	E	V	G	M
Template Known Secondary structure														T	T													T	T								S	T	T	S	S										T	S	S			S							T	T				T	T	S		G	G	.	.	G	T	T
Template Predicted Secondary structure																																																																										.	.
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.			.	.	.	.	.	.
		86	.	.	.	90	.	.	.	.	.		.	.	.	.	100	.	.	.	.	.	.	.	.	.			110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure												.															.	.
Query SS confidence												.															.	.
Query Sequence		C	A	Q	T	P	T	L	F	G	D	.	T	V	Y	D	N	L	I	F	P	W	Q	I	R	N	.	.	R	Q	P	D	P	A	I	F	L	D	F	L	E	R	F	A	L	P	D	S	I	L	T	K	N	I	A	E	L	S	G	G	E	K	Q	R	I	S	L	I	R	N	L	Q	F	M	P	K	V	L	L	L	D
Query Conservation												.															.	.
Alig confidence												.															.	.																		.
Template Conservation																																														.
Template Sequence		V	F	Q	N	Y	A	L	Y	P	H	M	T	V	F	E	N	I	A	F	P	L	R	A	R	R	I	S	K	D	E	V	E	K	R	V	V	E	I	A	R	K	L	L	I	.	D	N	L	L	D	R	K	P	T	Q	L	S	G	G	Q	Q	Q	R	V	A	L	A	R	A	L	V	K	Q	P	K	V	L	L	F	D
Template Known Secondary structure				S	S					T	T	S								G	G	G	S	S	S		S					T	T										T	T		.	G	G	G	T	T	S		G	G	G	S															T	T			S
Template Predicted Secondary structure																																														.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.		.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.		.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure																																										.
Query SS confidence																																										.
Query Sequence		E	I	T	S	A	L	D	E	S	N	K	H	N	V	N	E	M	I	H	R	Y	V	R	E	Q	N	I	A	V	L	W	V	T	H	D	K	D	E	I	N	.	H	A	D	K	V	I	T	L	Q	P	H	A	G	E	M	Q	E	A	R	Y	E	L
Query Conservation																																										.
Alig confidence																																										.
Template Conservation
Template Sequence		E	P	L	S	N	L	D	A	N	L	R	M	I	M	R	A	E	I	K	H	L	Q	Q	E	L	G	I	T	S	V	Y	V	T	H	D	Q	A	E	A	M	T	M	A	S	R	I	A	V	F	N	Q	G	K	L	V	Q	Y	G	T	P	D	E	V
Template Known Secondary structure		S	T	T	T	T	S																												S										S							T	T
Template Predicted Secondary structure
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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