Phyre 2 alignment of P33570 with d2ozla1

Job Description P33570
Confidence 100.00% Date Thu Jan 5 11:52:13 GMT 2012

Rank 41 Aligned Residues 299

% Identity 17% Template d2ozla1

SCOP info Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Branched-chain alpha-keto acid dehydrogenase PP module

Resolution 1.90

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	A	I	R	A	L	S	M	D	A	V	Q	K	A	N	S	G	H	P	G	A	P	M	G	M	A	D	I	A	E	V	L	W	N	D	F	L	K	H	N	P	T	D	P	T	W	Y	D	R	D	R	F	I	L	S	N	G	H	A	S	M	L	L	Y	S	L	L	H	L	T	G	Y	D	L	P	L	E	E	L	K	N
Query Conservation
Alig confidence													.																							.	.	.	.	.		.			.	.	.	.					.	.						.	.	.										.
Template Conservation													.																							.	.	.	.	.		.			.	.	.	.					.	.						.	.	.										.
Template Sequence	E	L	K	A	D	Q	L	Y	K	Q	K	I	.	I	R	G	F	C	H	L	C	D	G	Q	E	A	C	C	V	G	L	E	A	G	I	.	.	.	.	.	N	.	P	T	.	.	.	.	D	H	L	I	.	.	T	A	Y	R	A	.	.	.	H	G	F	T	F	T	R	G	L	.	S	V	R	E	I	L	A	E
Template Known Secondary structure										T	T	S	.	S		S						T	T											T	S	.	.	.	.	.		.	T	T	.	.	.	.	S				.	.			S			.	.	.							T	T		.
Template Predicted Secondary structure													.																							.	.	.	.	.		.			.	.	.	.					.	.						.	.	.										.
Template SS confidence
	46	.	.	.	50	.	.	.	.	.	.	.		.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.						80		.	.					.	.	.	.			.	.	.	90	.				.	.	.	.	.	.	.	.	100		.	.	.	.	.	.	.	.

	89	90	.	.	.	.	.							.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure								.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.
Query Sequence	F	R	Q	L	H	S	K	.	.	.	.	.	.	T	P	G	H	P	E	I	G	Y	T	P	G	V	E	T	T	T	G	P	L	G	Q	G	L	A	N	A	V	G	L	A	I	A	E	R	T	L	A	A	Q	F	N	Q	P	D	H	E	I	V	D	H	F	T	Y	V	F	M	G	D	G	C	L	M	E	G	I	S
Query Conservation								.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.								.	.	.																														.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.																														.	.	.	.	.	.	.	.	.	.
Template Sequence	L	T	G	R	K	G	G	C	A	K	G	K	G	G	S	M	H	M	Y	A	.	.	.	K	N	F	Y	G	G	N	G	I	V	G	A	Q	V	P	L	G	A	G	I	A	L	A	C	K	Y	N	G	K	.	.	.	.	.	.	.	.	.	.	D	E	V	C	L	T	L	Y	G	D	G	A	A	N	Q	G	Q	I
Template Known Secondary structure		T	T		T	T	S	T	T	T	T	S	S		T	T				B	.	.	.	T	T	B						S	T	T	T																T		.	.	.	.	.	.	.	.	.	.										T	T	G	G	G
Template Predicted Secondary structure																					.	.	.																														.	.	.	.	.	.	.	.	.	.
Template SS confidence
	109	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.				.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.											.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.

	163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230				.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																																					.	.	.
Query SS confidence																																																																					.	.	.
Query Sequence	H	E	V	C	S	L	A	G	T	L	G	L	G	K	L	I	G	F	Y	D	H	N	G	I	S	I	D	G	E	T	E	G	W	F	T	D	D	T	A	K	R	F	E	A	Y	H	W	H	V	I	H	E	I	D	G	H	D	P	Q	A	V	K	E	A	I	L	E	A	.	.	.	Q	S	V	K	D	K	P	S	L
Query Conservation																																																																					.	.	.
Alig confidence														.																												.										.																	.	.	.
Template Conservation														.																												.										.
Template Sequence	F	E	A	Y	N	M	A	A	L	W	K	L	P	.	C	I	F	I	C	E	N	N	R	Y	G	M	G	T	S	V	E	R	A	A	A	S	T	D	Y	Y	K	.	R	G	D	F	I	P	G	L	R	.	V	D	G	M	D	I	L	C	V	R	E	A	T	R	F	A	A	A	Y	C	R	S	G	K	G	P	I	L
Template Known Secondary structure										T	T			.									S			T	T								S				G	G	G	.	T	T	T	T	S					.			T	T																		T	T
Template Predicted Secondary structure														.																												.										.
Template SS confidence
	176	.	.	.	180	.	.	.	.	.	.	.	.		.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.		.	.	.	.	220	.	.	.	.		.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.

	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.			.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.
Predicted Secondary structure																																			.	.
Query SS confidence																																			.	.
Query Sequence	I	I	C	R	T	V	I	G	F	G	S	P	N	K	A	G	K	E	E	A	H	G	A	P	L	G	E	E	E	V	A	L	A	R	.	.	Q	K	L	G	W	H	H	P	P	F	E	I	P	K	E	I	Y	H	A	W	D	A	R	E	K	G	E	K	A	Q	Q	S	W	N	E	K	F	A	A	Y	K	K	A	H
Query Conservation																																			.	.
Alig confidence																						.	.	.	.										.	.
Template Conservation																						.	.	.	.
Template Sequence	M	E	L	Q	T	Y	R	Y	H	G	H	E	M	S	D	P	G	V	S	Y	R	.	.	.	.	T	R	E	E	I	Q	E	V	R	S	K	S	D	P	I	M	L	L	K	D	R	M	V	N	S	N	L	A	S	V	E	E	L	K	E	I	D	V	E	V	R	K	E	I	E	D	A	A	Q	F	A	T	A	D	P
Template Known Secondary structure								S	S		S	S	T	T			S		S	S	S	.	.	.	.																									T	T	S	S																										S
Template Predicted Secondary structure																						.	.	.	.
Template SS confidence
	253	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.					.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.

	318	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	P	Q	L	A	E	E	F	T	R	R	M	S	G	G	L	P	K	D	W	E	K	T	T	Q	K	Y	I
Query Conservation
Alig confidence
Template Conservation
Template Sequence	E	P	P	L	E	E	L	G	Y	H	I	Y	S	S	D	P	P	F	E	V	R	G	A	N	Q	W	I
Template Known Secondary structure				G	G	G	T	T		S	S	S	S	S									S	S	T	T
Template Predicted Secondary structure
Template SS confidence
	329	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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