Job Description P33570 Confidence 100.00% Date Thu Jan 5 11:52:13 GMT 2012 Rank 43 Aligned Residues 301 % Identity 21% Template d2bfda1 SCOP info Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Branched-chain alpha-keto acid dehydrogenase PP module Resolution 1.39

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.			.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																																	.	.
Query SS confidence																																	.	.
Query Sequence		R	K	D	L	A	N	A	I	R	A	L	S	M	D	A	V	Q	K	A	N	S	G	H	P	G	A	P	M	G	M	A	.	.	D	I	A	E	V	L	W	N	D	F	L	K	H	N	P	T	D	P	T	W	Y	D	R	D	R	F	I	L	S	N	G	H	A	S	M	L	L	Y	S	L	L	H	L	T	G	Y	D
Query Conservation																																	.	.
Alig confidence								.																									.	.															.	.	.	.	.	.	.	.	.					.	.						.	.	.										.
Template Conservation								.																																									.	.	.	.	.	.	.	.	.					.	.						.	.	.										.
Template Sequence		Y	K	S	M	T	L	.	L	N	T	M	D	R	I	L	Y	E	S	Q	R	Q	G	R	I	S	F	Y	M	T	N	Y	G	E	E	G	T	H	V	G	S	A	A	A	L	D	N	T	.	.	.	.	.	.	.	.	.	D	L	V	F	.	.	G	Q	A	R	E	.	.	.	A	G	V	L	M	Y	R	D	Y	.
Template Known Secondary structure								.														T	T	S	S	S						T	T											T	S		T	T	.	.	.	.	.	.	.	.	.	S				.	.			S			.	.	.							T	T		.
Template Predicted Secondary structure								.																																									.	.	.	.	.	.	.	.	.					.	.						.	.	.										.
Template SS confidence
		61	.	.	.	.	.		.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.										.	.	.	110			.	.	.	.	.				.	.	.	.	120	.	.	.	.
		81	.	.	.	.	.	.	.	.	90	.							.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure													.	.	.	.	.	.
Query SS confidence													.	.	.	.	.	.
Query Sequence		L	P	L	E	E	L	K	N	F	R	Q	.	.	.	.	.	.	L	H	S	K	T	P	G	H	P	E	I	G	Y	T	P	G	V	E	T	T	T	G	P	L	G	Q	G	L	A	N	A	V	G	L	A	I	A	E	R	T	L	A	A	Q	F	N	Q	P	D	H	E	I	V	D	H	F	T	Y	V	F	M	G	D
Query Conservation													.	.	.	.	.	.
Alig confidence													.	.	.	.	.	.												.																																.	.	.	.	.	.	.	.	.	.
Template Conservation																														.																																.	.	.	.	.	.	.	.	.	.
Template Sequence		P	L	E	L	F	M	A	Q	C	Y	G	N	I	S	D	L	G	K	G	R	Q	M	P	V	H	Y	G	C	.	K	E	R	H	F	V	T	I	S	S	P	L	A	T	Q	I	P	Q	A	V	G	A	A	Y	A	A	K	R	A	N	A	.	.	.	.	.	.	.	.	.	.	N	R	V	V	I	C	Y	F	G	E
Template Known Secondary structure												T		T	T		T	T	T	T		S		S	S				B	.	T	T	T	T	B					S	S	T	T	T																T		.	.	.	.	.	.	.	.	.	.										T
Template Predicted Secondary structure																														.																																.	.	.	.	.	.	.	.	.	.
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.		.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.											.	.	.	.	.	.	190	.	.	.
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.		.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.
Predicted Secondary structure																																													.																																				.
Query SS confidence																																													.																																				.
Query Sequence		G	C	L	M	E	G	I	S	H	E	V	C	S	L	A	G	T	L	G	L	G	K	L	I	G	F	Y	D	H	N	G	I	S	I	D	G	E	T	E	G	W	F	T	.	D	D	T	A	K	R	F	E	A	Y	H	W	H	V	I	H	E	I	D	G	H	D	P	Q	A	V	K	E	A	I	L	E	A	Q	S	.
Query Conservation																																													.																																				.
Alig confidence																							.																						.																	.																			.
Template Conservation																							.																																							.
Template Sequence		G	A	A	S	E	G	D	A	H	A	G	F	N	F	A	A	T	L	E	C	P	.	I	I	F	F	C	R	N	N	G	Y	A	I	S	T	P	T	S	E	Q	Y	R	G	D	G	I	A	A	R	G	P	G	Y	G	I	M	S	I	R	.	V	D	G	N	D	V	F	A	V	Y	N	A	T	K	E	A	R	R	R
Template Known Secondary structure		T	G	G	G	S													T	T			.									S			T	T			G	G	G	T		S	S	S	T	T	G	G	G	T	G	G	G	T						.			T	T
Template Predicted Secondary structure																							.																																							.
Template SS confidence
		194	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.		.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.		.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.
				233	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure		.	.
Query SS confidence		.	.
Query Sequence		.	.	V	K	D	K	P	S	L	I	I	C	R	T	V	I	G	F	G	S	P	N	K	A	G	K	E	E	A	H	G	A	P	L	G	E	E	E	V	A	L	A	R	Q	K	L	G	W	H	H	P	P	F	E	I	P	K	E	I	Y	H	A	W	D	A	R	E	K	G	E	K	A	Q	Q	S	W	N	E	K	F
Query Conservation		.	.
Alig confidence		.	.																			.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.
Template Conservation																						.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	V	A	E	N	Q	P	F	L	I	E	A	M	T	Y	R	I	G	S	T	.	.	.	.	.	.	.	.	.	.	.	.	D	H	P	I	S	R	L	R	H	Y	L	L	S	Q	G	W	W	D	E	E	.	.	.	.	.	.	.	.	.	.	.	Q	E	K	A	W	R	K	Q	S	R	R	K	V	M	E	A	F
Template Known Secondary structure						T																.	.	.	.	.	.	.	.	.	.	.	.												T	T	T	T						.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																						.	.	.	.	.	.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		272	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.													.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.												.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.
		311	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	Y	K	K	A	H	P	Q	L	A	E	E	F	T	R	R	M	S	G	G	L	P	K	D	W	E	K	T	T	Q	K	Y	I	N	E	L	Q	A	N	P	A	K	I	A	T	R	K	A	S	Q	N	T	L	N	A	Y	G	P	M	L	P
Query Conservation
Alig confidence																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	Q	A	E	R	K	P	K	P	N	P	N	L	L	F	S	D	V	Y	Q	E	M	P	A	Q	L	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	K	Q	Q	E	S	L	A	R	H	L	Q	T	Y	G	E	H	Y	P
Template Known Secondary structure							S		B			G	G	G	G	S	T	T	S	S	S	S							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.														G	G	G	S
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.																		.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions