Phyre 2 alignment of P33570 with d1umda

Job Description P33570
Confidence 100.00% Date Thu Jan 5 11:52:13 GMT 2012

Rank 40 Aligned Residues 299

% Identity 17% Template d1umda_

SCOP info Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Branched-chain alpha-keto acid dehydrogenase PP module

Resolution 1.90

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	A	N	A	I	R	A	L	S	M	D	A	V	Q	K	A	N	S	G	H	P	G	A	P	M	G	M	A	D	I	A	E	V	L	W	N	D	F	L	K	H	N	P	T	D	P	T	W	Y	D	R	D	R	F	I	L	S	N	G	H	A	S	M	L	L	Y	S	L	L	H	L	T	G	Y	D	L	P	L	E	E
Query Conservation
Alig confidence																																							.	.	.	.	.	.	.	.	.									.	.						.	.	.										.
Template Conservation																																							.	.	.	.	.	.	.	.	.									.	.						.	.	.										.
Template Sequence	A	A	R	M	L	D	E	R	Y	T	I	L	I	R	T	G	K	T	S	F	I	A	P	A	A	G	H	E	A	A	Q	V	A	I	A	H	A	I	.	.	.	.	.	.	.	.	.	R	P	G	F	D	W	V	F	.	.	P	Y	Y	R	D	.	.	.	H	G	L	A	L	A	L	G	I	.	P	L	K	E	L
Template Known Secondary structure															T	T	S		S						T	T												S	.	.	.	.	.	.	.	.	.		T	T	T	S				.	.			T	T	T	.	.	.								T		.
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.									.	.						.	.	.										.
Template SS confidence
	47	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.										.	.	.	.	.	90	.	.			.	.	.	.	.				.	.	100	.	.	.	.	.	.		.	.	.	110	.

	86	.	.	.	90	.							.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.
Query Sequence	L	K	N	F	R	Q	.	.	.	.	.	.	L	H	S	K	T	P	G	H	P	E	I	G	Y	T	P	G	V	E	T	T	T	G	P	L	G	Q	G	L	A	N	A	V	G	L	A	I	A	E	R	T	L	A	A	Q	F	N	Q	P	D	H	E	I	V	D	H	F	T	Y	V	F	M	G	D	G	C	L	M	E
Query Conservation							.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.												.																																.	.	.	.	.	.	.	.	.	.
Template Conservation																								.																																.	.	.	.	.	.	.	.	.	.
Template Sequence	L	G	Q	M	L	A	T	K	A	D	P	N	K	G	R	Q	M	P	E	H	P	G	S	.	K	A	L	N	F	F	T	V	A	S	P	I	A	S	H	V	P	P	A	A	G	A	A	I	S	M	K	L	L	R	T	.	.	.	.	.	.	.	.	.	.	G	Q	V	A	V	C	T	F	G	D	G	A	T	S	E
Template Known Secondary structure						T	B	T	T		T	T	T	T		S		S	S				B	.	T	T	T	T	B					S	S	T	T	T	T														T	T		.	.	.	.	.	.	.	.	.	.										T	G	G	G	G	S
Template Predicted Secondary structure																								.																																.	.	.	.	.	.	.	.	.	.
Template SS confidence
	112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.		.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.											.	.	.	.	170	.	.	.	.	.	.	.	.	.	180

	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.		.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230				.	.	.	.	.
Predicted Secondary structure																																							.																																		.	.	.
Query SS confidence																																							.																																		.	.	.
Query Sequence	G	I	S	H	E	V	C	S	L	A	G	T	L	G	L	G	K	L	I	G	F	Y	D	H	N	G	I	S	I	D	G	E	T	E	G	W	F	T	.	D	D	T	A	K	R	F	E	A	Y	H	W	H	V	I	H	E	I	D	G	H	D	P	Q	A	V	K	E	A	I	L	E	A	.	.	.	Q	S	V	K	D
Query Conservation																																							.																																		.	.	.
Alig confidence																	.																						.																	.																	.	.	.
Template Conservation																	.																																							.
Template Sequence	G	D	W	Y	A	G	I	N	F	A	A	V	Q	G	A	P	.	A	V	F	I	A	E	N	N	F	Y	A	I	S	V	D	Y	R	H	Q	T	H	S	P	T	I	A	D	K	A	H	A	F	G	I	P	G	Y	L	.	V	D	G	M	D	V	L	A	S	Y	Y	V	V	K	E	A	V	E	R	A	R	R	G	E
Template Known Secondary structure													T	T		S	.									S			T	T								S	S	S		S	G	G	G	G	G	G	T	T	S					.			T	T																		T	T
Template Predicted Secondary structure																	.																																							.
Template SS confidence
	181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.		.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.		.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.

	236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.		.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure																																												.
Query SS confidence																																												.
Query Sequence	K	P	S	L	I	I	C	R	T	V	I	G	F	G	S	P	N	K	A	G	K	E	E	A	H	G	A	P	L	G	E	E	E	V	A	L	A	R	Q	K	L	G	W	.	H	H	P	P	F	E	I	P	K	E	I	Y	H	A	W	D	A	R	E	K	G	E	K	A	Q	Q	S	W	N	E	K	F	A	A	Y	K
Query Conservation																																												.
Alig confidence																										.	.	.	.															.
Template Conservation																										.	.	.	.
Template Sequence	G	P	S	L	V	E	L	R	V	Y	R	Y	G	P	H	S	S	A	D	D	D	S	R	Y	R	.	.	.	.	P	K	E	E	V	A	F	W	R	K	K	D	P	I	P	R	F	R	R	F	L	E	A	R	G	L	W	N	E	E	W	E	E	D	V	R	E	E	I	R	A	E	L	E	R	G	L	K	E	A	E
Template Known Secondary structure													S		S	S	T	T			G	G	G	T	S	.	.	.	.										T	T												T	T	T
Template Predicted Secondary structure																										.	.	.	.
Template SS confidence
	259	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.					.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.

	315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	K	A	H	P	Q	L	A	E	E	F	T	R	R	M	S	G	G	L	P	K	D	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence	E	A	G	P	V	P	P	E	W	M	F	E	D	V	F	A	E	K	P	W	H	L
Template Known Secondary structure		T		B			G	G	G	G	G	T	T	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
	335	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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