Phyre 2 alignment of P33570 with d1qs0a

Job Description P33570
Confidence 100.00% Date Thu Jan 5 11:52:13 GMT 2012

Rank 42 Aligned Residues 295

% Identity 16% Template d1qs0a_

SCOP info Thiamin diphosphate-binding fold (THDP-binding) Thiamin diphosphate-binding fold (THDP-binding) Branched-chain alpha-keto acid dehydrogenase PP module

Resolution 2.40

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	A	N	A	I	R	A	L	S	M	D	A	V	Q	K	A	N	S	G	H	P	G	A	P	M	G	M	A	D	I	A	E	V	L	W	N	D	F	L	K	H	N	P	T	D	P	T	W	Y	D	R	D	R	F	I	L	S	N	G	H	A	S	M	L	L	Y	S	L	L	H	L	T	G	Y	D	L	P	L	E	E
Query Conservation
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.								.						.	.	.										.
Template Conservation																																							.	.	.	.	.	.	.	.	.	.	.								.						.	.	.										.
Template Sequence	K	T	R	I	F	D	S	R	X	V	V	A	Q	R	Q	K	K	X	S	F	Y	X	Q	S	L	G	E	E	A	I	G	S	G	Q	A	L	A	L	.	.	.	.	.	.	.	.	.	.	.	N	R	T	D	X	C	F	.	P	T	Y	R	Q	.	.	.	Q	S	I	L	X	A	R	D	V	.	S	L	V	E	X
Template Known Secondary structure															T	T	S	S	S						T	T	T											S	.	.	.	.	.	.	.	.	.	.	.		T	T	S				.			S	S		.	.	.							T	T		.
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.								.						.	.	.										.
Template SS confidence
	86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.												.	.	.	.	.	.	130		.	.	.	.	.				.	.	.	.	140	.	.	.	.		.	.	.	.	.

	86	.	.	.	90	.	.	.	.	.	.							.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.	.
Query SS confidence												.	.	.	.	.	.
Query Sequence	L	K	N	F	R	Q	L	H	S	K	T	.	.	.	.	.	.	P	G	H	P	E	I	G	Y	T	P	G	V	E	T	T	T	G	P	L	G	Q	G	L	A	N	A	V	G	L	A	I	A	E	R	T	L	A	A	Q	F	N	Q	P	D	H	E	I	V	D	H	F	T	Y	V	F	M	G	D	G	C	L	M	E
Query Conservation												.	.	.	.	.	.
Alig confidence												.	.	.	.	.	.									.																														.	.	.	.	.	.	.	.	.	.
Template Conservation																										.																														.	.	.	.	.	.	.	.	.	.
Template Sequence	I	C	Q	L	L	S	N	E	R	D	P	L	K	G	R	Q	L	P	I	X	Y	S	V	R	E	.	A	G	F	F	T	I	S	G	N	L	A	T	Q	F	V	Q	A	V	G	W	A	X	A	S	A	I	K	G	D	.	.	.	.	.	.	.	.	.	.	T	K	I	A	S	A	W	I	G	D	G	A	T	A	E
Template Known Secondary structure						T		T	T		T	T	T	T		S		T	T				B	G	G	.	G	T	B					S	S	S	S																T	T		.	.	.	.	.	.	.	.	.	.										T	G	G	G	G	S
Template Predicted Secondary structure																										.																														.	.	.	.	.	.	.	.	.	.
Template SS confidence
	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.		.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.											.	.	.	.	.	.	210	.	.	.	.	.	.	.	.

	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.			.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.				.	.
Predicted Secondary structure																																						.	.																																					.	.	.
Query SS confidence																																						.	.																																					.	.	.
Query Sequence	G	I	S	H	E	V	C	S	L	A	G	T	L	G	L	G	K	L	I	G	F	Y	D	H	N	G	I	S	I	D	G	E	T	E	G	W	F	.	.	T	D	D	T	A	K	R	F	E	A	Y	H	W	H	V	I	H	E	I	D	G	H	D	P	Q	A	V	K	E	A	I	L	E	A	Q	S	.	.	.	V	K
Query Conservation																																						.	.																																					.	.	.
Alig confidence																	.																					.	.																		.																			.	.	.
Template Conservation																	.																																								.
Template Sequence	S	D	F	H	T	A	L	T	F	A	H	V	Y	R	A	P	.	V	I	L	N	V	V	N	N	Q	W	A	I	S	T	F	Q	A	I	A	G	G	E	S	T	T	F	A	G	R	G	V	G	C	G	I	A	S	L	R	.	V	D	G	N	D	F	V	A	V	Y	A	A	S	R	W	A	A	E	R	A	R	R	G
Template Known Secondary structure														T			.									S			T	T			G	G	G	G	T	T	T	T			S	T						T	T						.			T	T																		T	T
Template Predicted Secondary structure																	.																																								.
Template SS confidence
	219	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.		.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.		.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.

	235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	D	K	P	S	L	I	I	C	R	T	V	I	G	F	G	S	P	N	K	A	G	K	E	E	A	H	G	A	P	L	G	E	E	E	V	A	L	A	R	Q	K	L	G	W	H	H	P	P	F	E	I	P	K	E	I	Y	H	A	W	D	A	R	E	K	G	E	K	A	Q	Q	S	W	N	E	K	F	A	A	Y	K
Query Conservation
Alig confidence																											.	.	.	.
Template Conservation																											.	.	.	.
Template Sequence	L	G	P	S	L	I	E	W	V	T	Y	R	A	G	P	H	S	T	S	D	D	P	S	K	Y	R	.	.	.	.	P	A	D	D	W	S	H	F	P	L	G	D	P	I	A	R	L	K	Q	H	L	I	K	I	G	H	W	S	E	E	E	H	Q	A	T	T	A	E	F	E	A	A	V	I	A	A	Q	K	E	A
Template Known Secondary structure	S													S		S	S	T	T			G	G	G	T	S	.	.	.	.		T	T						T	T														T	T	S
Template Predicted Secondary structure																											.	.	.	.
Template SS confidence
	297	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.					.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.

									315	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
Predicted Secondary structure	.	.	.	.	.	.	.	.
Query SS confidence	.	.	.	.	.	.	.	.
Query Sequence	.	.	.	.	.	.	.	.	K	A	H	P	Q	L	A	E	E	F	T	R	R	M	S	G	G	L	P
Query Conservation	.	.	.	.	.	.	.	.
Alig confidence	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	E	Q	Y	G	T	L	A	N	G	H	I	P	S	A	A	S	X	F	E	D	V	Y	K	E	X	P	D
Template Known Secondary structure		T	T			S	S	S						S	S	G	G	G	S	S	S	S	S	S
Template Predicted Secondary structure
Template SS confidence
	373	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

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Lawrence Kelley, Benjamin Jefferys
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