Job Description P33570 Confidence 100.00% Date Thu Jan 5 11:52:13 GMT 2012 Rank 23 Aligned Residues 301 % Identity 21% Template c3dufD_ PDB info PDB header:oxidoreductase/transferase Chain: D: PDB Molecule:pyruvate dehydrogenase e1 component subunit beta; PDBTitle: snapshots of catalysis in the e1 subunit of the pyruvate2 dehydrogenase multi-enzyme complex Resolution 2.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	K	I	A	T	R	K	A	S	Q	N	T	L	N	A	Y	G	P	M	L	P	E	L	L	G	G	S	A	D	L	A	P	S	N	L	T	I	W	K	G	S	V	S	L	K	E	D	P	A	G	N	Y	I	H	Y	G	V	R	E	F	G	M	T	A	I	A	N	G	I	A	H	H	G	G	F	V	P	Y	T	A
Query Conservation
Alig confidence																																																																											.
Template Conservation																																																																											.
Template Sequence		A	Q	M	T	M	V	Q	A	I	T	D	A	L	R	I	E	L	K	N	D	P	N	V	L	I	F	G	E	D	V	G	V	N	G	G	V	F	R	A	T	E	G	L	Q	A	E	F	G	E	D	R	V	F	D	T	P	L	A	E	S	G	I	G	G	L	A	I	G	L	A	L	Q	G	.	F	R	P	V	P	E
Template Known Secondary structure																						T	T						T	T		S	T	T			T	T	S	T	T	T	T							T	T	T						S															T	T	.
Template Predicted Secondary structure																																																																											.
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.
		432		.	.	.	.	.	.	.	440	.	.	.	.	.	.	.		.	.									450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.
Predicted Secondary structure			.																.			.	.	.	.	.	.	.	.
Query SS confidence			.																.			.	.	.	.	.	.	.	.
Query Sequence		T	.	F	L	M	F	V	E	Y	A	R	N	A	A	R	M	A	.	A	L	.	.	.	.	.	.	.	.	M	K	A	R	Q	I	M	V	Y	T	H	D	S	I	G	L	G	E	D	G	P	T	H	Q	A	V	E	Q	L	A	S	L	R	L	T	P	N	F	S	T	W	R	P	C	D	Q	V	E	A	A	V	G
Query Conservation			.																.			.	.	.	.	.	.	.	.
Alig confidence			.																.			.	.	.	.	.	.	.	.														.	.	.
Template Conservation																																											.	.	.
Template Sequence		I	Q	F	F	G	F	V	Y	E	V	M	D	S	I	C	G	Q	M	A	R	I	R	Y	R	T	G	G	R	Y	H	M	P	I	T	I	R	S	P	F	G	G	.	.	.	G	V	H	T	P	E	L	H	S	D	S	L	E	G	L	V	A	Q	Q	P	G	L	K	V	V	I	P	S	T	P	Y	D	A	K	G	L
Template Known Secondary structure			S	S	G	G	G	G	G	G	G							T	T	T	T					T	T	T	S	S													.	.	.	S	S				T	T	S	S								T	T	S	T	T								S
Template Predicted Secondary structure																																											.	.	.
Template SS confidence
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120				.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		502	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.		.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580
Predicted Secondary structure																							.
Query SS confidence																							.
Query Sequence		W	K	L	A	V	E	R	H	N	G	P	T	A	L	I	L	S	R	Q	N	L	.	A	Q	V	E	R	T	P	D	Q	V	K	E	I	A	R	G	G	Y	V	L	K	D	S	G	G	K	P	D	I	I	L	I	A	T	G	S	E	M	E	I	T	L	Q	A	A	E	K	L	A	G	E	G	R	N	V	R	V	V
Query Conservation																							.
Alig confidence							.																.																										.	.
Template Conservation							.																																										.	.
Template Sequence		L	I	S	A	I	.	R	D	N	D	P	V	I	F	L	E	H	L	K	L	Y	R	S	F	R	Q	E	V	P	E	G	E	Y	T	I	P	I	G	K	A	D	I	K	R	E	G	K	.	.	D	I	T	I	I	A	Y	G	A	M	V	H	E	S	L	K	A	A	A	E	L	E	K	E	G	I	S	A	E	V	V
Template Known Secondary structure							.		S	S	S								T	T	T	T	T	S							S	S						T	T									S	.	.	S							T	T														T	T	T
Template Predicted Secondary structure							.																																										.	.
Template SS confidence
		157	.	.	160	.		.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.			.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
		581	.	.	.	.	.	.	.	.	590	.	.	.		.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.	610	.	.	.	.	.	.	.	.	.	620	.	.	.	.									.	.	.	.	.	630	.		.	.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650
Predicted Secondary structure															.																																.	.	.	.	.	.	.	.								.
Query SS confidence															.																																.	.	.	.	.	.	.	.								.
Query Sequence		S	L	P	S	T	D	I	F	D	A	Q	D	E	.	E	Y	R	E	S	V	L	P	S	N	V	A	A	R	V	A	V	E	A	G	I	A	D	Y	W	Y	K	Y	V	G	L	.	.	.	.	.	.	.	.	K	G	A	I	V	G	M	.	T	G	Y	G	E	S	A	P	A	D	K	L	F	P	F	F	G	F	T
Query Conservation															.																																.	.	.	.	.	.	.	.								.
Alig confidence															.																																.	.	.	.	.	.	.	.								.									.	.	.
Template Conservation																																																																							.	.	.
Template Sequence		D	L	R	T	V	Q	P	L	D	I	E	T	I	I	G	S	V	E	K	T	G	R	A	I	V	V	Q	E	A	Q	R	Q	A	G	I	A	A	N	V	V	A	E	I	N	E	R	A	I	L	S	L	E	A	P	V	L	R	V	A	A	P	D	T	V	Y	P	F	A	Q	.	.	.	A	E	S	V	W	L	P	N
Template Known Secondary structure				S				S														S										T	T	S	S	S													G	G	G		S	S									S	S	S				G	G	.	.	.	G					S
Template Predicted Secondary structure																																																																							.	.	.
Template SS confidence
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.				.	.	.	.	.	.	.	310
		651	.	.	.	.	.	.	.	.	660	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	E	N	I	V	A	K	A	H	K	V	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		F	K	D	V	I	E	T	A	K	K	V	M
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		311	.	.	.	.	.	.	.	.	320	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions