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Job DescriptionP33570
Confidence100.00%DateThu Jan 5 11:52:13 GMT 2012
Rank14Aligned Residues637
% Identity17%Templatec3ahhA_
PDB info PDB header:lyaseChain: A: PDB Molecule:xylulose 5-phosphate/fructose 6-phosphate phosphoketolase; PDBTitle: h142a mutant of phosphoketolase from bifidobacterium breve complexed2 with acetyl thiamine diphosphate
Resolution2.10 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10. ........ 20.........30.........40.........50........
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Query Sequence  SRKDLANAIR. . . . . . ALSMDAVQ. . . . . . . . . . . . . . . . . KANSGHPGAPMGMADIAEVLWNDFLKHNPTDPTWYDRDR
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Template Sequence  SEEAIEGMDKYWRVTNYMSIGQIYLRSNPLMKEPFTRDDVKHRLVGHWGTTPGLNFLLAHINRLIADHQQN. . . . . . . TV
Template Known Secondary structure 
BSS
TT

SS

GGGB
SS

S

SSTB
.......B
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   18.20.........30.........40.........50.........60.........70.........80........ .90
 
   5960.........70........ .80.........90.........100... ......110.........120........
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Query Sequence  FILSNGHASMLLYSLLHLTG. . . . . . . . YDLPLEELKNFRQLHSKTPGHPEIG. . YTPGVETTTGPLGQGLANAVGLAIA
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Template Sequence  FIMGPGHGGPAGTSQSYVDGTYTEYYPNITKDEAGLQKFFRQFSYPGGIPSAFAPETPGSIHEGGELGYALSHAYGAVMN
Template Known Secondary structure 
SSGGGS
TTS
SSBT
TTSB
SS

TTSTT
S


SSTT
TT
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   91........100.........110.........120.........130.........140.........150.........160.........170
 
   129130.........140.........150.........160 .........170.........180.........190.. .......200...
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Query Sequence  ERTLAAQFNQPDHEIVDHFTYVFMGDGCLMEG. . . ISHEVCSLAGTLGLGKLIGFYDHNGISIDGET. . EGWFTDDTAKR
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Template Sequence  NP. . . . . . . . . . . . . . SLFVPCIIGDGEAETGPLATGWQSNKLVNPRTDGIVLPILHLNGYKIANPTILARISDEELHDF
Template Known Secondary structure 
T..............T
TTGGGSGGGGGSS
TTTS


SBSSSSB
S
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   171. .......180.........190.........200.........210.........220.........230......
 
   204.....210..... ....220.........230 .........240.........250... ...
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Query Sequence  FEAYHWHVIHEI. . . DGHDPQAVKEAILEA. . . . . . . . . . . . . . . . . . QSVKDKPSLIICRTVIGFGSPNK. . . . . . AGK
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Template Sequence  FRGMGYHPYEFVAGFDNEDHMSIHRRFAELFETIFDEICDIKAAAQTDDMTRPFYPMLIFRTPKGWTCPKFIDGKKTEGS
Template Known Secondary structure  TT
SSS


TT

SS




TTTTS
STT
TTS
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   237..240.........250.........260.........270.........280.........290.........300.........310......
 
   257..260.........270.........280.........290.........300.........310.........320.........330......
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Query Sequence  EEAHGAPLGEEEVALARQKLGWHHPPFEIPKEIYHAWDAREKGEKAQQSWNEKFAAYKKAHPQLAEEFTRRMSGGLPKDW
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Template Sequence  WRAHQVPLASARDTEEHFEVLKGWMESYKPEELFNADGSIKDDVTAFM. . . . . PKGELRIGANPNANGGVIREDLKLPEL
Template Known Secondary structure  GGGSS
S
TTTTTTST
GGGTB
TTS
B
TTS.....

GGGSTTT
GGGGGGGT







G
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   317..320.........330.........340.........350.........360.... .....370.........380.........390.
 
   337..340.........350.........360.........370.. .......380......... 390.........400.
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Query Sequence  EKTTQKYINELQANPAKIATRKASQNTLNAYGPMLP. ELLGGSADLAPSNLTIW. . . . . . . . . . . . . . KGSVSLKEDPAG
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Template Sequence  DQYEVTGVKEYGHGWGQVEAPRALGAYCRDIIKNNPDSFRIFGPDETASNRLNATYEVTDKQWDNGYLSGLVDEHMAVTG
Template Known Secondary structure  GGG

T
TTTSTTTSS
TTTTT
GGGGGT



S



TTT

SSS
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   392.......400.........410.........420.........430.........440.........450.........460.........470.
 
   402.......410.........420.........430...... ...440... ......450 .........460........
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Query Sequence  NYIHYGVREFGMTAIANGIAHHGGFVPYTATFLMF. . . VEYARNA. . . . ARMAALM. . . . . . KARQIMVYTHDSIGLGED
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Template Sequence  QVTE. QLSEHQCEGFLEAYLLTGR. HGIWSSYESFVHVIDSMLNQHAKWLEATVREIPWRKPISSVNLLVSSHVWRQDHN
Template Known Secondary structure  S.
S
TT
.GGGGGGG
TTS


B
S
GGG
TTS
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   472... ....480.........490.... .....500.........510.........520.........530.........540.........
 
   469470.........480. ........490.........500.........510.........520.........530.........540...
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Query Sequence  GPTHQAVEQLASL. . . . . RLTPNFSTWRPCDQVEAAVGWKLAVERHNGPTALILSRQNLAQVERTPDQVKEIARGGYVLK
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Template Sequence  GFSHQDPGVTSLLINKTFNNDHVTNIYFATDANMLLAISEKCFKSTNKINAIFAGKQPAPTWVTLDEARAELEAGAAEWK
Template Known Secondary structure 
GGG


TTT

TT




S
BS



S
S
S
T
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   550.........560.........570.........580.........590.........600.........610.........620.........
 
   544.....550.........560.. .......570.........580........ .590.........600.........610
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Query Sequence  . . . . . DSGGKPDIILIATGSEMEI. TLQAAEKLAGEGRNVRVVSLPSTDIF. . . . . . . DAQDEEYRESVLPSNVAARVAV
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Template Sequence  WASNAENNDEVQVVLASAGDVPTQELMAASDALNKMGIKFKVVNVVDLLKLQSRENNDEALTDEEFTELFTADK. PVLFA
Template Known Secondary structure  TT


SSTTT
SSTT


BGGGGS
TTT
TTS


SSS.
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   630.........640.........650.........660.........670.........680.........690.........700... .....
 
   611........620.. .......630.........640.........650.........660.......
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Query Sequence  EAGIADYWYKYV. . . . . GLKGAIVGMTGYGESAPADKLFPFFGFTAENIVAKAHKVLGVKGA
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Template Sequence  YHSYAQDVRGLIYDRPNHDNFHVVGYKEQGSTTTPFDMVRVNDMDRYALQAAALKLIDADKY
Template Known Secondary structure  SS
TTTSTTGGG


S


S

TT
STTTT
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   709710.........720.........730.........740.........750.........760.........770
 
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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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Lawrence Kelley, Benjamin Jefferys 
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