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Job DescriptionP33570
Confidence100.00%DateThu Jan 5 11:52:13 GMT 2012
Rank30Aligned Residues494
% Identity14%Templatec2yicC_
PDB info PDB header:lyaseChain: C: PDB Molecule:2-oxoglutarate decarboxylase; PDBTitle: crystal structure of the suca domain of mycobacterium smegmatis2 alpha-ketoglutarate decarboxylase (triclinic form)
Resolution1.96 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   113......120.........130.........140.........150........ .160.........170....... ..180........
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Query Sequence  GPLGQGLANAVGLAIAERTLAAQFNQPDHEIVDHFTYVFMGDGCLM. EGISHEVCSLAGTLGLGKL. . . IGFYDHNGISI
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Template Sequence  SHLEAVDPVLEGLVRAKQD. . . LLDTGEEGRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYR. TGGTIHIVVNNQIGF
Template Known Secondary structure  SSTTTT...TT
STT




TTTT
TTT
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S


S
BT
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   604.....610.........620.. .......630.........640.........650.........660.... .....670.........
 
   189190....... ..200.........210.........220.........230 .........240.........250.........260....
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Query Sequence  DGETEGWFT. DDTAKRFEAYHWHVIHEIDGHDPQAVKEAILEA. . . QSVKDKPSLIICRTVIGFGSPNKAGKEEAHGAPL
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Template Sequence  TTAPTDSRSSEYCTDVAKMIGAPIFHV. NGDDPEACAWVARLAVDFRQAFKKDVVIDMLCYRRRGHNEGDDP. . . . . SMT
Template Known Secondary structure  TB

SSSSTTGGGGGGT

.TT







S
SSTT

G.....GGT
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   683......690.........700......... 710.........720.........730.........740.........750... ...
 
   265....270......... 280.........290.........300.........310......... 320.........
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Query Sequence  GEEEVALARQKLGWH. . HPPFEIPKEIYHAWDAREKGEKAQQSWNEKFAAYKKAHPQ. . . . . . . . . . . . . LAEEFTRRMS
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Template Sequence  QPYMYDVIDTKRGSRKAYTEALIGRGDISMKEAEDALRDYQGQLERVFNEVRELEKHELATAVDKAMLQRIGDAHLALPE
Template Known Secondary structure 
TT


TTSS







TT


T
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   757..760.........770.........780.........790.........800.........810.........820.........830......
 
   330.........340.........350.........360.........370.........380..... ....
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Query Sequence  GGLPKDWEKTTQKYINELQANPAKIATRKASQNTLNAYGPMLPELLGGSADLAPSN. . . . . . . . . . . . . . . . . . . . LTIW
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Template Sequence  GFTVHPRVRPVLEKRREMAYEGR. IDWAFAELLALGSLIAEGKLVRLSGQDTQRGTFTQRHAVIVDRKTGEEFTPLQLLA
Template Known Secondary structure  T



TTT

.B
TT
TTTTT
TTS


SS
TTT


GGGGGG
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   853......860.........870..... ....880.........890.........900.........910.........920.........930.
 
   390.........400.........410.........420......... 430.........440.... .....450.........460
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Query Sequence  KGSVSLKEDPAGNYIHYGVREFGMTAIANGIAHHGGFVPY. . TATFLMFVEYARNAA. . . . . . . RMAALMKARQIMVYTH
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Template Sequence  TNPDGTPTGGKFLVYNSALSEFAAVGFEYGYSVGNPDAMVLWEAQFGDFVNGAQSIIDEFISSGEAKWGQLSDVVLLLPH
Template Known Secondary structure  B
TTS
B
S


S
S
TTS
SSGGGGGGGTTTT






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   932.......940.........950.........960.........970.........980.........990.........1000.........1010.
 
   461........470.........480. ........490.........500.........510 .........520.........530.......
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Query Sequence  DSIGLGEDGPTHQAVEQLASL. . RLTPNFSTWRPCDQVEAAVGWKLAVERHN. GPTALILSRQNLAQVERTPDQVKEIAR
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Template Sequence  . . . GHEGQGPDHTSGRIERFLQLWAEGSMTIAMPSTPANYFHLLRRHGKDGIQRPLIVFTPKSMLRNKAAVSDIRDFTES
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SSS
TTSS




TTS



SSS




SGGGG
TTS
B
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   1012.......1020.........1030.........1040.........1050.........1060.........1070.........1080........
 
   538.540..... ....550.........560.........570.........580.........590... ..... .600....
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Query Sequence  GGYVLKDS. . . . . . . . . GGKPDIILIATGSEMEITLQAAEKLAGEGRNVRVVSLPSTDIFDAQDE. EYRES. . . VLPSNV
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Template Sequence  KFRSVLEEPMYTDGEGDRNKVTRLLLTSG. KIYYEL. AARKAKENREDVAIVRIEQLAPLPRRRLAETLDRYPNVKEKFW
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TSS

GGG


S.T.T
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   10891090.........1100.........1110....... ..1120... ......1130.........1140.........1150.........1160......
 
   605....610.........620..
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Query Sequence  AARVAVEAGIADYWYKYV
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Template Sequence  VQEEPANQGAWPSFGLTL
Template Known Secondary structure  TTSTT
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   1167..1170.........1180....
 
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No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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