 |
Job Description | P33570 | Confidence | 23.40% | Date | Thu Jan 5 11:52:13 GMT 2012 |
Rank | 358 | Aligned Residues | 36 |
% Identity | 25% | Template | c2v1dA_ |
PDB info |
PDB header:oxidoreductase/repressor | Chain: A: PDB Molecule:lysine-specific histone demethylase 1; |
PDBTitle: structural basis of lsd1-corest selectivity in histone h32 recognition
|
Resolution | 3.10 Å |
|
  |   |
546 | . | . | . | 550 | . | . | . | . | . | . | . | . | . | 560 | . | . | . | . | . | . | . | . | . | 570 | . | . | . | . | . | . | . | . | . | 580 | . | . | . | . |
Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
G | G | K | P | D | I | I | L | I | A | T | G | S | E | M | E | I | T | L | Q | A | A | E | K | L | A | G | E | G | R | N | V | R | V | V | S | L | P | S |
Query Conservation |   |
  |   |   |   |
|
|   |
|
|
|   |
|   |   |
|   |   |
|
|   |
|
|   |   |
|   |   |   |
|
|   |   |   |
|
|   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |
|   |
|
|
|
|
|
|
|   | . | . | . |
|
|
|   |
|
|   |   |
|   |   |   |
|   |   |
|   |
|
|
|
|   |   |
Template Sequence |   |
K | K | T | G | K | V | I | I | I | G | S | G | V | . |
. |
. |
S | G | L | A | A | A | R | Q | L | Q | S | F | G | M | D | V | T | L | L | E | A | R | D |
Template Known Secondary structure |   |
S |
|
| S |  |  |  |  |  |
|
| S |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  | T | T |
|  |  |  |  |  |
| S | S | S |
Template Predicted Secondary structure |   |
|
|
|
|
|  |  |  |  |
|
|
|  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
276 | . | . | . | 280 | . | . | . | . | . | . | . | . | |
|
|
. | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|